| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1621 |
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| Symbol | |
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| ID | 3965176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2085819 |
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| End bp | 2086463 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920704 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_527095 |
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| Protein GI | 90021268 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.0243824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTATACA TTTTTGATTG GGACGGCACA ATTAGTGATT CGACGGCGAA AATATGTAAG
TGCATGCAAT TGGCCGCACA GGAAGTGGGG TTGCCCGTTT TAAGTAACGA GCAAATAAAA
AACATAATCG GCCTGGGTTT GCCCGAGGCG CTACGTGTTT TGTATCCGCA CGAAAGCGAC
GCAAGTAGAG AGGCCATTAA GCTTGCTTAC TCGCGCCACT TTGCCCAAGC GGATGTCACG
CCTTCGGCGT TTTTCCCGCG TGTTATGGAA ACTTTAGATG CACTGCACGA AAAGGGCAGT
AAAATTGCTG TGGCAACGGG TAAAAGCCGC AAAGGCTTAA ACCGCGTATT GTCGAACTTG
GGGTTGGAAG ATTATTTTCA TGCAAGTCGC TGCGCAGATG AAACCTGTTC TAAGCCAAAC
CCACGCATGC TGCAGGAGCT GCTAGTAGAG TTCGATGTGC CCGTTGATAA AGCGGTCATG
ATTGGCGATA CCGAATACGA TATGTCGATG GCGTACCAAA TAAACATGCC CAAAATAGCC
GTAAGTTACG GGGCGCACAG CTTGGATAGA ATGCTGAAAT ACGAGCCGCA GTTATGTGTG
GATGAGTTTG AGCAAATTTT AAATTGGAAT TTTGAGGGGA AGTAA
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| Protein sequence | MLYIFDWDGT ISDSTAKICK CMQLAAQEVG LPVLSNEQIK NIIGLGLPEA LRVLYPHESD
ASREAIKLAY SRHFAQADVT PSAFFPRVME TLDALHEKGS KIAVATGKSR KGLNRVLSNL
GLEDYFHASR CADETCSKPN PRMLQELLVE FDVPVDKAVM IGDTEYDMSM AYQINMPKIA
VSYGAHSLDR MLKYEPQLCV DEFEQILNWN FEGK
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