| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1619 |
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| Symbol | |
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| ID | 3965726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2080750 |
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| End bp | 2083656 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637920701 |
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| Product | RNAse E |
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| Protein accession | YP_527093 |
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| Protein GI | 90021266 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000868095 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.696665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA TGCTCATTAA TGCAACTCAG CCCGAAGAGT TGCGCGTAGC TTTAGTCGAT
GGCCAATGGC TTTACGATTT AGACATAGAA AACCGCCTTA GAGAGCAAAA AAAGGCCAAT
ATTTACAAAG GCCGAATCAC CCGCGTTGAA CCCTCCTTAG AAGCCGCATT TGTCGATTAC
GGCTCTGAAC GTCACGGCTT TTTACCCCTT AAAGAAATTT CTCGCGAATA CTTTGCCAAG
CAGCCTAAAG ACATTGACGG CCGCATCCGC ATCCAAGATG TGGTTAAAGA AGGCATGGAA
GTTATTGTTC AAGTAGATAA AGAAGAGCGC GGCAACAAAG GCGCGGCACT TACTACCTTC
ATTAGCTTGG CTGGGCGCTA CCTAGTACTT ATGCCCAATA ACCCACGCGC AGGCGGTATT
TCACGTCGCA TTGACGGAGA CGATCGCACA GAGCTTAAAG ATGCATTGAG TCAAATTGAT
GTACCAGCAG GCATGGGCAT TATTGTTCGC ACCGCTGGCG TAGGCCGCAG AGCCGAAGAG
TTGCAGTGGG ATATGAACTA CCTCGCTCAG CTTTGGGCAT CCATTAAAAC CGCTGCCGAA
GAAAAAACTG CACCGGAATT CCTATTCCAA GAAAGTAACG TCATTATTCG TGCTATTCGC
GATTACTTGC GCCCAGACAT AGGCGAAGTA ATTGTAGATA ACCAAGATGC GTACAACCTT
GCCACCGCAT TTGTTGAGCA AGTAATGCCC AACTACCGCA GCAAAGTGAA GCTTTACGAA
GAGCCTCTCC CCCTATTCAA CCGCTTTCAA ATCGAATCGC AAATTGAAAC TGCTTTTGAG
CGCGAAGTGA AACTACCTTC TGGCGGCTCT ATTGTTATTG ACGTTACCGA AGCGCTTATC
AGTATCGATA TTAACTCTTC ACGCGCCACC AAAGGCGGCG ATATCGAAGA AACAGCCCTA
CAAACTAACC TAGAAGCAGC AGATGAAATT GCCCGTCAAT TGCGCTTGCG CGACATGGGC
GGCCTAGTAG TTATCGACTT TATCGATATG CAGCCTGTTC GCAACCAGCG CGAAGTTGAA
AACCGCATGC GCGACGCCCT AGAAATGGAC CGCGCCCGCG TACAAGTTGG CCGCATTTCT
CGCTTTGGGT TACTGGAAAT GTCTCGCCAA CGCCTGCGCC CTTCTCTTGG TGAAACCACA
TCTAAAGTGT GCCCTCGCTG TAGCGGTCAA GGCACCATTC GCGGCACCAA ATCTATCGCG
CTCTCTATTT TGCGCTTAGT AGAAGAAGAG GCTCAAAAAG AGCGCAGCGC AGAAATTCGC
GCAGTTGTGC CGGTTGCCGT AGCAACCTAC CTGCTGAACG AAAAGCGCAA AGTGATTTCT
GGCATAGAAG AACGCCAAAA AACACGTATT GTTATTATCC CTAGCGAGAA GATGACAACG
CCACACTTCG ACGTACAGCG CCTGCGCGAT GACGATGTAG TTTCTTCAGA AATAAGCTAC
AAAATTGAAG TGCCGCAAGG CGAAGACGAA GAAAAAATCC AAGATGATGC TGCAGCACTG
GCTAAATTGC CACGCCCAGC GGTACAGGCT ATTCCCCCTG CGCAACCTGC GCCAGAGGCT
CCAAAACCAG ACAGCCTATT AACTAAAATA CTTAAAAAGT TAAAAGAGCT ATTTAAAACG
GACGACAAAA AGCGCAAGAA CACCAGTAAA AACTCGCGTG GGCAACAGCG TCGTCGTGGC
AACAATAGCC AAAACAACAG AAACAGAAAT AGAAATCGCA ACGGGCGCGG CAACGATAAT
CGCAATAAGA ATCGCGATGA CGAAATTACC GACAACCTAA GCTCACGCAC CAAGTCTGAC
CAAAGCCAAC AGGGCCAGGG CCCCAGCTCG GACGATAACA GGCCAGATCG CGGCAACCGC
AAGCGCGGTA ACCGCAGACG CAACAACAAC CGTCGCAACG ACCAGGATCG CAACGATTCA
CCAGAGTCTA ACAACGACGA GCAACAAAAC AACAACCAGC CTCAGGAGCA GAATAACGCC
CCTAAAGAGC AAGGCCCTAA CCGTCGCCCG AATGGACGCA GAGGCCGTGG TGGTCGTGAG
CGCAAGCGCG AGCCAGTTCC ACAAGCCGCC GAAGAATCAG TAACAAAAGA TGATTCCGCA
CTAGCTGCCG AAGTGACTTC AGCAATAGAC ACTGCAGAAA AAGCATTCGC GACCAATAGC
CCTGCTGAAC TTAAGCAAGC TAAAAGCGAA GCTAAAGAGC AGGCTAAAAG CGAAGCTAAA
GAGCAGGCTA AAAGCGAAGC TAAAGAGCAG GCTAAACAGG AACGAGCGCC ACAAGAAGCA
GCTATAACAG CAGAAACGCC CAGCGAAGCT AAGCAACCGG AAGCTACGGC TACCGCTGCA
GAAGCCAAGC CAGAGCCAAG CGAAAAAGCT AAAGCAAGCC AAGCGCCGCA AGCCGCTGAA
GCGAGCGATA CAACTGAAAC CGTAGCTGAA ACCAAAGTAG AAGCACCTAG TGCCGAAGCT
GCACCAGCGA AGGAAGCACC TGTAGAAACT GCCGCAGAAA CCGCTAGCGA AGCTGAAACT
GCAGAGCCAG TAGCTGCAGC CGAAACCGCT GAGGTTGCAG AAGTTGCAGT GGCTGAAGCT
ACTGAAGAGG CCTCTGAAGC AAAAGAAGAG CTCGCTCCTG CTCAAGCAGT GCGCAAGCAA
TACTCTCGCG CAACTAACGA CCCAAGAGCG ACGCCTAAAC CTGTTGCCAA TACGCTTGTA
TCTAATGTGG TTACCCAAAT ACGTATGTCG CGACCACTAG ACACAACCCA ACCGGCTAAC
ATTTTGCGCA ACCCGCGCGA TTTAAGTCGC CCTGCGAACG ATCCGCGCTT AAAACGCAAT
ATAGAAGAAG TAGCGAGCGA CGCATAA
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| Protein sequence | MKRMLINATQ PEELRVALVD GQWLYDLDIE NRLREQKKAN IYKGRITRVE PSLEAAFVDY
GSERHGFLPL KEISREYFAK QPKDIDGRIR IQDVVKEGME VIVQVDKEER GNKGAALTTF
ISLAGRYLVL MPNNPRAGGI SRRIDGDDRT ELKDALSQID VPAGMGIIVR TAGVGRRAEE
LQWDMNYLAQ LWASIKTAAE EKTAPEFLFQ ESNVIIRAIR DYLRPDIGEV IVDNQDAYNL
ATAFVEQVMP NYRSKVKLYE EPLPLFNRFQ IESQIETAFE REVKLPSGGS IVIDVTEALI
SIDINSSRAT KGGDIEETAL QTNLEAADEI ARQLRLRDMG GLVVIDFIDM QPVRNQREVE
NRMRDALEMD RARVQVGRIS RFGLLEMSRQ RLRPSLGETT SKVCPRCSGQ GTIRGTKSIA
LSILRLVEEE AQKERSAEIR AVVPVAVATY LLNEKRKVIS GIEERQKTRI VIIPSEKMTT
PHFDVQRLRD DDVVSSEISY KIEVPQGEDE EKIQDDAAAL AKLPRPAVQA IPPAQPAPEA
PKPDSLLTKI LKKLKELFKT DDKKRKNTSK NSRGQQRRRG NNSQNNRNRN RNRNGRGNDN
RNKNRDDEIT DNLSSRTKSD QSQQGQGPSS DDNRPDRGNR KRGNRRRNNN RRNDQDRNDS
PESNNDEQQN NNQPQEQNNA PKEQGPNRRP NGRRGRGGRE RKREPVPQAA EESVTKDDSA
LAAEVTSAID TAEKAFATNS PAELKQAKSE AKEQAKSEAK EQAKSEAKEQ AKQERAPQEA
AITAETPSEA KQPEATATAA EAKPEPSEKA KASQAPQAAE ASDTTETVAE TKVEAPSAEA
APAKEAPVET AAETASEAET AEPVAAAETA EVAEVAVAEA TEEASEAKEE LAPAQAVRKQ
YSRATNDPRA TPKPVANTLV SNVVTQIRMS RPLDTTQPAN ILRNPRDLSR PANDPRLKRN
IEEVASDA
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