Gene Sde_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1616 
Symbol 
ID3965723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp2077692 
End bp2078789 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content44% 
IMG OID637920698 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_527090 
Protein GI90021263 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.150904 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.902349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACTA AACTAGGCCA AGCCAACCCC GCGAATTATC AGCAGCAGCT GGACGACAAA 
GAAAAGGCGA CCAAAGAGCA ATTCAGCGAT TTTTGGCAAG GCGACATAGA AGTACACCCT 
TCCCCCCCCA GCCACTACCG AATGCGCGCA GAATTCAAAA TGTGGCAACA AGGCGCCGAA 
GCCTTCTACG CCATGTATCA ACCTGGCGAG TATAAAAAGC CTGTCACATT GGAGTGGGAA 
TTTAGCGTAG GCGCAGAAAA AATTGTCGAG CTAATGCCAA AGTTACTCGA AATTGTAAAC 
GCCTCCGAGC TGTTGCGTAA GCGCCTGTTT CAAGTGGAAT TTTTAACCAC TACAACCGGT 
GAAAGCGTTA CTACTCTTAT TTACCACAAA CCATTAACTG AAGAATGGCA AGCAGAAGCC 
AACGCACTTG CTAGCAGCCT AAACACACAT ATTATTGGAC GCAGCAAAAA GCAAAAAATT 
GTTTTGACAC AAGATTACGT CGAAGAAACC CTTACCATTA GCGGTACGCC ATTTACGTAC 
AAACAGATTG AGTCTGGGTT TACCCAGCCA AACGCAGCCG TATGTCAAAA AATGCTGCAA 
TGGGCAGTAG ATGCCACCGC AAACCTGGGT GGCGACCTAG TAGAACTGTA CTGTGGTAAC 
GGCAACTTCA CACTACCACT AAGTAAAAAC TTCGACAAAG TACTTGCCAC AGAAGTATCT 
AAAACTTCTG TAAAGGCCGC TGAATACAAT ATAGAAAAAA ACGGCTGTAA AAATATCACC 
ATTGCAAGAA TGTCGAGTGA AGAATTTACC GAAGCATTAA ATGGCGTGCG AGAATTTAGA 
CGATTAAAAG ATATAGAATT AGACAGCTAT AATTTTAGCA CCGTGTTTGT AGACCCCCCT 
AGAGCGGGGC TAGATGAAGA TACTGAAGCG CTAATTAGCC GGTTCGACAA TATTATTTAT 
ATTTCGTGCA ACCCCGACAC ACTCGCCAAC AATCTTGCCA ACCTCTGCAA AACGCACAAA 
GTTGAACGCT TTGCGTTATT CGATCAATTC CCTTATACCG ATCATCGCGA ATGCGGTGTA 
ATACTTACCA AAAAATAA
 
Protein sequence
MTTKLGQANP ANYQQQLDDK EKATKEQFSD FWQGDIEVHP SPPSHYRMRA EFKMWQQGAE 
AFYAMYQPGE YKKPVTLEWE FSVGAEKIVE LMPKLLEIVN ASELLRKRLF QVEFLTTTTG 
ESVTTLIYHK PLTEEWQAEA NALASSLNTH IIGRSKKQKI VLTQDYVEET LTISGTPFTY 
KQIESGFTQP NAAVCQKMLQ WAVDATANLG GDLVELYCGN GNFTLPLSKN FDKVLATEVS 
KTSVKAAEYN IEKNGCKNIT IARMSSEEFT EALNGVREFR RLKDIELDSY NFSTVFVDPP 
RAGLDEDTEA LISRFDNIIY ISCNPDTLAN NLANLCKTHK VERFALFDQF PYTDHRECGV 
ILTKK