Gene Sde_1610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1610 
Symbol 
ID3965717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2069588 
End bp2072005 
Gene Length2418 bp 
Protein Length805 aa 
Translation table11 
GC content46% 
IMG OID637920692 
ProductLon-A peptidase 
Protein accessionYP_527084 
Protein GI90021257 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0466] ATP-dependent Lon protease, bacterial type 
TIGRFAM ID[TIGR00763] ATP-dependent protease La 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000614629 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCAAT TAGACACAAA TAAACTAGAT CATATCCTCC CTCTACTACC CCTAAGAGAT 
GTGGTGGTTT ACCCGCACAT GGTTATTCCG CTTTTTGTTG GTAGAGAGAA ATCCATTTCT
GCGCTCGAGC ATGCGATGTC TGACGACAAG CAAGTGCTTC TTGTGGCCCA GAAGCACGCA
TCTGTGGATG ACCCGTCCAA GGATGACCTG TACGGGCATG GCACCATTGC CACCGTGCTA
CAGCTTCTTA AATTGCCCGA TGGCACCGTT AAAGTGCTGG TAGAGGGCAA GCGCCGAGCC
ATTATTGATG AGATTCAAGA GTCCGAAAAC TACTTCCAAG CGCAAATACG CCCATTGGTT
GCGGATGAAG AGGAAGAGCG TGAAGCTGAA GCGCTCGCTC GTTCGCTGCT TACTCGATTT
GAGCAGTATG TGAATATAAG CAAAAAGGTG CCTTCAGAGG TGCTTACATC GCTAAGCGGT
ATTGATGAGC CGGGTAGGCT TGCAGATACA GTGGCGGCGC ATATGTCGCT AGATTTGGCT
CAGAAGCAAG AAATTTTAGA AATCGCTAGC ACGCAAGAAA GGTTAGAGCA CTTAATAGGC
TTGCTCGAAG CTGAAGCGGA CTTATTCCAA GTTGAAAAGC GCATTCGTGG TCGCGTTAAA
AAACAAATGG AAAAAAGTCA GCGCGAGTAC TATTTGAATG AGCAAATGAA AGCCATTCAA
AAAGAGCTTG GTGACATGGG CGAAGAGGGC AATGAGCTAG AAGAGCTCGA GAAGAAAATT
GCCGATTCGG GCATGGGCAA AGATGCGATG GAGAAAACCC ACGCAGAGCT GGCCAAACTA
AAAATGATGT CTCCTATGTC AGCCGAAGCA TCGGTGGTGC GTTCGTATAT TGACTGGATG
ATTAACCTGC CTTGGAAAAA ACGCAGCAAA GTTAGGCACG ATTTAGAAAT CGCTCAATCA
ATACTTGAAT CCGACCACTA CGGTTTGGAA GAAGTAAAAG AGCGAATTCT TGAGTACTTG
GCGGTTCAAA AACGCGTTAA GAAAATTAAA GGGCCTATTT TGTGTTTGGT TGGCCCCCCT
GGTGTAGGTA AAACGTCGTT GGGCGAATCT ATCGCTCGCG CAACTAACCG TAAATTTGTG
CGTATGGCTT TGGGCGGCGT GCGAGATGAA GCCGAAATTC GAGGGCATCG CCGAACTTAC
ATAGGTTCTA TGCCTGGCAA GCTTGTACAA AAAATGTCGA AAATTGGGGT GAAGAACCCG
CTGTTTTTGC TAGATGAAAT TGACAAAATG GGAATGGATC ATCGCGGTGA TCCAGCATCT
GCATTGCTTG AGGTGCTAGA CCCAGAGCAG AACAATAGCT TTAACGACCA CTACTTAGAG
GTGGATTACG ATCTATCTGA AGTAATGTTT GTGTGTACGT CAAACACTAT GAATATTCCT
GGGCCTTTGT TAGACCGCAT GGAAGTTATT CGTATTCCGG GCTATACCGA AGACGAAAAA
ATAAACATCG CTACGCGCTA CCTTATTCCA AAGCAAATCA AAAATAATGG TTTGAAAGAA
AATGAGATAG AAATTCAAGA TGAAGCGATT CGCGATGTGG TTCGTTACTA TACTCGCGAA
GCGGGTGTGC GTGGCTTAGA TCGTGAAGTT GCAAAACTCT GTCGAAAAGT TGTAACGCAA
AATGTTAAAA ATAAAACGCA AGACAAAATA GTTATTACTA GCGATAAGCT AGAAGATTAT
TTAGGCGTTA AAAAAGCGGA TTACGGCAAA GCGGAAGACA AAAACCAAGT GGGGCAGGTT
ACTGGTTTAG CGTGGACCCA GGTTGGCGGT GAGCTATTAA CCATCGAGTC TTCTGCTGTG
AAAGGGCGCG GTAGGTTAGT TAAAACCGGC TCACTGGGCG ATGTTATGCA AGAGTCTATT
CAGGCTGCGA TGACCGTTGT GCGTTCGCGC TCCAAGTTTT TAGGCATTGC ACCAGATATT
CACGAGAAGC GAGATTTGCA TATTCACGTC CCAGAAGGTG CGACACCTAA AGATGGGCCT
AGTGCGGGTA TTGCAATGTG TACCGCATTG GTGTCTGTTT ATACCGATAT TCCGGTGCGA
GCGGATGTGG CCATGACCGG TGAAATTACG CTACGTGGTG AGGTGTTAAA AATTGGTGGG
CTAAAAGAAA AATTGTTAGC CGCACACCGA GGGGGCATTA AAACGGTCAT TATTCCGCAT
GAGAATGAGG CCGATTTGAG AGAAATTCCC GATAATATAA AGGCAGACCT ATCGATAAAG
CCTGTACAAT GGATAGATCA GGTCCTTGAA ATTGCGTTGC AATACATGCC AAAACCCTTC
AGTGATGAAG AATATGAGGC GCTCGAAACC AAAGCCCAGA AGGAAGGTGA AGAGCAGAGC
AGGATAAGCA CGCACTAA
 
Protein sequence
MDQLDTNKLD HILPLLPLRD VVVYPHMVIP LFVGREKSIS ALEHAMSDDK QVLLVAQKHA 
SVDDPSKDDL YGHGTIATVL QLLKLPDGTV KVLVEGKRRA IIDEIQESEN YFQAQIRPLV
ADEEEEREAE ALARSLLTRF EQYVNISKKV PSEVLTSLSG IDEPGRLADT VAAHMSLDLA
QKQEILEIAS TQERLEHLIG LLEAEADLFQ VEKRIRGRVK KQMEKSQREY YLNEQMKAIQ
KELGDMGEEG NELEELEKKI ADSGMGKDAM EKTHAELAKL KMMSPMSAEA SVVRSYIDWM
INLPWKKRSK VRHDLEIAQS ILESDHYGLE EVKERILEYL AVQKRVKKIK GPILCLVGPP
GVGKTSLGES IARATNRKFV RMALGGVRDE AEIRGHRRTY IGSMPGKLVQ KMSKIGVKNP
LFLLDEIDKM GMDHRGDPAS ALLEVLDPEQ NNSFNDHYLE VDYDLSEVMF VCTSNTMNIP
GPLLDRMEVI RIPGYTEDEK INIATRYLIP KQIKNNGLKE NEIEIQDEAI RDVVRYYTRE
AGVRGLDREV AKLCRKVVTQ NVKNKTQDKI VITSDKLEDY LGVKKADYGK AEDKNQVGQV
TGLAWTQVGG ELLTIESSAV KGRGRLVKTG SLGDVMQESI QAAMTVVRSR SKFLGIAPDI
HEKRDLHIHV PEGATPKDGP SAGIAMCTAL VSVYTDIPVR ADVAMTGEIT LRGEVLKIGG
LKEKLLAAHR GGIKTVIIPH ENEADLREIP DNIKADLSIK PVQWIDQVLE IALQYMPKPF
SDEEYEALET KAQKEGEEQS RISTH