Gene Sde_1602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1602 
Symbol 
ID3965669 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2057819 
End bp2058811 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content45% 
IMG OID637920683 
Producttranscriptional regulator 
Protein accessionYP_527076 
Protein GI90021249 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAG TCTTCTTACT CTGCCCCAAT ATGCTTGCCA CCAGCGTAAC CTTACCGCTG 
GAACTACTAC GCGCAGCCGA GGCACTAAAC AATTCCGCGC GCGACCTTAA AAATAAAAAT
GTAAAAGCGC TGGATATACA ACTTGCTTCT GTGAACGGCC AACCAGTGAA AACCCATACA
GGGTTAACCT TAAATGCCGA TTGCGCGGTG CAGGGCTGTG ATGATGCCGA TATTGTTTAT
TTGCCGGCGT TGTGGCGCAA CCCGTTTCCC ACAGTATCTG GCTCGCCAAC CACTACCGCA
TGGCTAAACA ACTTATATGA AAATGGATGC ACAATTGCAG GTGTAGGCAC GGGCTGCTGC
TTTATGGCAG AAGCAGGCCT GCTCGACAAC AAACCCGCTA CCACTCATTG GCATTTTTTC
GATGCCTTTC AGCACCGCTA CCCGCTCGTG CAACTAAAAC GACAATATTT TATTACCCAA
GCGGGCAACC TTTATTGCAC AGGCAGTGTG AACGCCCTTG CGGATTTAAC CGTACTGTTT
ATACAGCGCT ATTATTCAAA GCACGTAGCC AGCCATGTAG AAAGACATTT TTTTCACGAA
ATTAGGCAAG CCTACCAAAG CGGCACAAGC TTACTAGAGC AAGAAAACTC TCACCCAGAT
GAGGAGATTA TTCAAACACA AATTTGGCTG CGCGATAATT TCGCAAAAGA GATTAAATTG
AATGATGTTG CCCAGCTATT TAGCATGAGC CCAAGAACGT TTACCCGTCG CTTTAAAAGC
GCAACCGGTC GCACGCCACT ACATTACCTG CAAAATATTC GCATAGACGT AGCCAAAGAC
TTATTGCAAA CCAGTAATTT AAGCGTATCC GAAATAATGT TTCGCGTGGG TTATCACGAC
CCTACACACT TCACCAATTT ATTTAAAAAA TCGTTAGGTG TTACACCCAG CCAATACAGA
ACAACCGTAA GAGCAAAATT ATTTAGCGTT TAA
 
Protein sequence
MKVVFLLCPN MLATSVTLPL ELLRAAEALN NSARDLKNKN VKALDIQLAS VNGQPVKTHT 
GLTLNADCAV QGCDDADIVY LPALWRNPFP TVSGSPTTTA WLNNLYENGC TIAGVGTGCC
FMAEAGLLDN KPATTHWHFF DAFQHRYPLV QLKRQYFITQ AGNLYCTGSV NALADLTVLF
IQRYYSKHVA SHVERHFFHE IRQAYQSGTS LLEQENSHPD EEIIQTQIWL RDNFAKEIKL
NDVAQLFSMS PRTFTRRFKS ATGRTPLHYL QNIRIDVAKD LLQTSNLSVS EIMFRVGYHD
PTHFTNLFKK SLGVTPSQYR TTVRAKLFSV