Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1602 |
Symbol | |
ID | 3965669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2057819 |
End bp | 2058811 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920683 |
Product | transcriptional regulator |
Protein accession | YP_527076 |
Protein GI | 90021249 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGTAG TCTTCTTACT CTGCCCCAAT ATGCTTGCCA CCAGCGTAAC CTTACCGCTG GAACTACTAC GCGCAGCCGA GGCACTAAAC AATTCCGCGC GCGACCTTAA AAATAAAAAT GTAAAAGCGC TGGATATACA ACTTGCTTCT GTGAACGGCC AACCAGTGAA AACCCATACA GGGTTAACCT TAAATGCCGA TTGCGCGGTG CAGGGCTGTG ATGATGCCGA TATTGTTTAT TTGCCGGCGT TGTGGCGCAA CCCGTTTCCC ACAGTATCTG GCTCGCCAAC CACTACCGCA TGGCTAAACA ACTTATATGA AAATGGATGC ACAATTGCAG GTGTAGGCAC GGGCTGCTGC TTTATGGCAG AAGCAGGCCT GCTCGACAAC AAACCCGCTA CCACTCATTG GCATTTTTTC GATGCCTTTC AGCACCGCTA CCCGCTCGTG CAACTAAAAC GACAATATTT TATTACCCAA GCGGGCAACC TTTATTGCAC AGGCAGTGTG AACGCCCTTG CGGATTTAAC CGTACTGTTT ATACAGCGCT ATTATTCAAA GCACGTAGCC AGCCATGTAG AAAGACATTT TTTTCACGAA ATTAGGCAAG CCTACCAAAG CGGCACAAGC TTACTAGAGC AAGAAAACTC TCACCCAGAT GAGGAGATTA TTCAAACACA AATTTGGCTG CGCGATAATT TCGCAAAAGA GATTAAATTG AATGATGTTG CCCAGCTATT TAGCATGAGC CCAAGAACGT TTACCCGTCG CTTTAAAAGC GCAACCGGTC GCACGCCACT ACATTACCTG CAAAATATTC GCATAGACGT AGCCAAAGAC TTATTGCAAA CCAGTAATTT AAGCGTATCC GAAATAATGT TTCGCGTGGG TTATCACGAC CCTACACACT TCACCAATTT ATTTAAAAAA TCGTTAGGTG TTACACCCAG CCAATACAGA ACAACCGTAA GAGCAAAATT ATTTAGCGTT TAA
|
Protein sequence | MKVVFLLCPN MLATSVTLPL ELLRAAEALN NSARDLKNKN VKALDIQLAS VNGQPVKTHT GLTLNADCAV QGCDDADIVY LPALWRNPFP TVSGSPTTTA WLNNLYENGC TIAGVGTGCC FMAEAGLLDN KPATTHWHFF DAFQHRYPLV QLKRQYFITQ AGNLYCTGSV NALADLTVLF IQRYYSKHVA SHVERHFFHE IRQAYQSGTS LLEQENSHPD EEIIQTQIWL RDNFAKEIKL NDVAQLFSMS PRTFTRRFKS ATGRTPLHYL QNIRIDVAKD LLQTSNLSVS EIMFRVGYHD PTHFTNLFKK SLGVTPSQYR TTVRAKLFSV
|
| |