| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1600 |
|---|
| Symbol | |
|---|
| ID | 3965667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2056591 |
|---|
| End bp | 2057100 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637920681 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_527074 |
|---|
| Protein GI | 90021247 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0071] Molecular chaperone (small heat shock protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.000328737 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGATT TCGATTTAAC CCCATTGTAC CGTTCTGCTA TTGGCTTTGA TCGCATGGCC
GGCCTGCTAG ATAATTTAAC GCGCGCCGAT CAAGCTCAGC CATCTTATCC GCCTTATAAC
ATAGAGTTAA CTGGCGAAGA TCAATATCGA ATTTCTATGG CTGTTGCTGG CTTTGAAGAT
ACAGAACTTT CTATTGAAGT TAAGCAAGGC TATTTAACGG TAATGGGTAA AAAAGCTGAA
GAGAAAGCAA GCCGAACCTT CTTACATCAA GGAATTGCTG CGAGAAATTT CGAGCGCCGC
TTCCAATTAG CTGACTATGT GCGAGTAGTA GGTGCCAATA TGGATAACGG GTTGCTACAT
GTAGAGCTTG TGCGAGAAAT ACCAGAGGCA ATGAAGCCGC GCACAATTCA AATTACTTCT
ACAAAACGTA ATAATGTTAG ATCTGTCGAT GGTTCACTAG GTGATAGCGT GCGCGAAGCG
CGGCCACTTG ATGCTACTGG CACCAACTAA
|
|---|
| Protein sequence | MRDFDLTPLY RSAIGFDRMA GLLDNLTRAD QAQPSYPPYN IELTGEDQYR ISMAVAGFED
TELSIEVKQG YLTVMGKKAE EKASRTFLHQ GIAARNFERR FQLADYVRVV GANMDNGLLH
VELVREIPEA MKPRTIQITS TKRNNVRSVD GSLGDSVREA RPLDATGTN
|
|---|
| |