Gene Sde_1598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1598 
Symbol 
ID3965665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2053622 
End bp2055541 
Gene Length1920 bp 
Protein Length639 aa 
Translation table11 
GC content46% 
IMG OID637920679 
Productarginine decarboxylase 
Protein accessionYP_527072 
Protein GI90021245 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1166] Arginine decarboxylase (spermidine biosynthesis) 
TIGRFAM ID[TIGR01273] arginine decarboxylase, biosynthetic 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0503845 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAATAC CGTTTAAAAA AGGTTGGTCT ATCGCCGATT CAACTGAGTT GTATGGCGTG 
AATGACTGGG GTGTAGGCTA CTTTTCTGTG TCTGAAGACG GCAAAGTGAT TGTAACCCCC
AATATTGACG GCAAAACCAT CGAACTTCCA TTGTTAAACG TGGTTTCCGA CATTAAGGAT
CGGGGCATGG ATGTGCCCGT TTTAATACGC TTTGAAGATT TACTAGAAGA ACAAATAGGC
CGCTTAAACA ACGCTTTTAC TACCGCAATC AAAGCCAGCA ACTACCAAGG CCAATACCGT
GGCGTGTTCC CTATTAAGGT GAATCAGCAG TGCCACGTTA TTGAAGAAAT CGCCGAAGTG
GGCGCTAAAT ATGGTCACGG CCTTGAGGCG GGCTCTAAAC CCGAGCTCAT CATTGCGCTA
GCCCACCTAG AAAGCCAAGA CGCTTGTATT GTGTGCAATG GCTATAAAGA TGCCGAGTTC
ATCGATTTAG GCCTACAGGC CTGCAAAATG GGCTATAAGT GCTTCTTTGT AATCGAAACG
CCGTCTGAGC TACCTATTAT TATTGAACGC AGCCGCAAGC TGGGCATTAA GCCTATGATT
GGCGTGCGCG TTAAATTAGC CTCTATGGTT GGTGGACACT GGAACGCCAC CAGTGGTGAT
CGGTCTATTT TTGGCCTATC TATTGCCCAA CTTATTGAAA TGGTAGATAC CCTCAAAGCC
GAAGGCATGC TCGACTGCCT TAAGCTGCTG CACTACCACC TGGGCTCGCA AATTCCAAAT
ATTCGCGACA TTCGCTCTGG CGTGCTTGAA GCCTGTCACG TTTACAACGA GCTAGTTAAA
GAAGGCGCGG CTATGGGCTA CCTAGATTTA GGTGGTGGCT TAGCGGTGGA TTACGACGGC
TCCAAATCTA ACTATATTCA CTCTAAAAAC TACACCCTAG ATGAATACTG CACAGATATA
GTGGATGTCA TTATTTCTAC CCTAGACCCG CAAGGTGTAG AGCACCCTAC AATTATTACC
GAATCTGGCC GGGCAACTAT CGCCTATTCA TCTGTACTTG TATTCAACGT ATTGGATGTC
GCTAAGTTTG AGCCGGCCTC ACCTGTAGAT GAAGTACAAG AAGACGAGCA CGAGCTTATA
CACAACTTAA AAGAGTCGCT AGATTCTGTA TCGCTGCGTA ATATTCAAGA GTGCTATAAC
GATACCGTTT ACTATCGCGA CGAGATAAGA GAGCTATTTA AACGCGGTCA AATATCTTTG
CGCTCTCGCT CACTTGCAGA AAACCTATTT CTACAAACCA TGCACCGCTT GGTGGCACTT
GCCGATGATG CCCCGCGCAC CATGCATGAA ATAGAAAAGT TAAAAGAGCA GCTATCTGAT
ATTTACTACT GCAACTTCAG TTTGTTCCAG TCGCTGCCAG ATATTTGGGC TATTGATCAA
ATTTTCCCAA TCAGCCCTAT TCATCGCTTA AACGAGTTCC CCGATCGCAA CGCGATGATT
GCCGATATAA CCTGCGACTG CGACGGCAAG ATAGACCGCT TTAGCAATAT GCACGAAACC
CGCAAAACTT TGCCGCTGCA CGATTTAAAA GCAAACGAAG AATATTATAT AGGCGTGTTT
TTAGTAGGCG CCTATCAAGA AACGCTGGGC GACTTACACA ATTTGTTTGG CGATACCAAC
GTGGTTAGCG TGCGCGTTCA AAAAGATGGC AGCTACGATT TTTCCGACGA AATTGAAGGC
GATAGCATTG CCGACGTACT CACCTACGTT GAGTACCAAC CGCAAAACTT ACGCGAGCGG
TTCCGCAAAA TTGCAGAGCG CTCTGTTCGC CAAGGCTTCA TTACAGGCGC CGAACGCCAA
TCCATAATGA AAACTTTTTC AGATAGCATG ATGGGTTACA CCTACTACGA AAAAGACTAA
 
Protein sequence
MKIPFKKGWS IADSTELYGV NDWGVGYFSV SEDGKVIVTP NIDGKTIELP LLNVVSDIKD 
RGMDVPVLIR FEDLLEEQIG RLNNAFTTAI KASNYQGQYR GVFPIKVNQQ CHVIEEIAEV
GAKYGHGLEA GSKPELIIAL AHLESQDACI VCNGYKDAEF IDLGLQACKM GYKCFFVIET
PSELPIIIER SRKLGIKPMI GVRVKLASMV GGHWNATSGD RSIFGLSIAQ LIEMVDTLKA
EGMLDCLKLL HYHLGSQIPN IRDIRSGVLE ACHVYNELVK EGAAMGYLDL GGGLAVDYDG
SKSNYIHSKN YTLDEYCTDI VDVIISTLDP QGVEHPTIIT ESGRATIAYS SVLVFNVLDV
AKFEPASPVD EVQEDEHELI HNLKESLDSV SLRNIQECYN DTVYYRDEIR ELFKRGQISL
RSRSLAENLF LQTMHRLVAL ADDAPRTMHE IEKLKEQLSD IYYCNFSLFQ SLPDIWAIDQ
IFPISPIHRL NEFPDRNAMI ADITCDCDGK IDRFSNMHET RKTLPLHDLK ANEEYYIGVF
LVGAYQETLG DLHNLFGDTN VVSVRVQKDG SYDFSDEIEG DSIADVLTYV EYQPQNLRER
FRKIAERSVR QGFITGAERQ SIMKTFSDSM MGYTYYEKD