Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1598 |
Symbol | |
ID | 3965665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2053622 |
End bp | 2055541 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920679 |
Product | arginine decarboxylase |
Protein accession | YP_527072 |
Protein GI | 90021245 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0503845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAAATAC CGTTTAAAAA AGGTTGGTCT ATCGCCGATT CAACTGAGTT GTATGGCGTG AATGACTGGG GTGTAGGCTA CTTTTCTGTG TCTGAAGACG GCAAAGTGAT TGTAACCCCC AATATTGACG GCAAAACCAT CGAACTTCCA TTGTTAAACG TGGTTTCCGA CATTAAGGAT CGGGGCATGG ATGTGCCCGT TTTAATACGC TTTGAAGATT TACTAGAAGA ACAAATAGGC CGCTTAAACA ACGCTTTTAC TACCGCAATC AAAGCCAGCA ACTACCAAGG CCAATACCGT GGCGTGTTCC CTATTAAGGT GAATCAGCAG TGCCACGTTA TTGAAGAAAT CGCCGAAGTG GGCGCTAAAT ATGGTCACGG CCTTGAGGCG GGCTCTAAAC CCGAGCTCAT CATTGCGCTA GCCCACCTAG AAAGCCAAGA CGCTTGTATT GTGTGCAATG GCTATAAAGA TGCCGAGTTC ATCGATTTAG GCCTACAGGC CTGCAAAATG GGCTATAAGT GCTTCTTTGT AATCGAAACG CCGTCTGAGC TACCTATTAT TATTGAACGC AGCCGCAAGC TGGGCATTAA GCCTATGATT GGCGTGCGCG TTAAATTAGC CTCTATGGTT GGTGGACACT GGAACGCCAC CAGTGGTGAT CGGTCTATTT TTGGCCTATC TATTGCCCAA CTTATTGAAA TGGTAGATAC CCTCAAAGCC GAAGGCATGC TCGACTGCCT TAAGCTGCTG CACTACCACC TGGGCTCGCA AATTCCAAAT ATTCGCGACA TTCGCTCTGG CGTGCTTGAA GCCTGTCACG TTTACAACGA GCTAGTTAAA GAAGGCGCGG CTATGGGCTA CCTAGATTTA GGTGGTGGCT TAGCGGTGGA TTACGACGGC TCCAAATCTA ACTATATTCA CTCTAAAAAC TACACCCTAG ATGAATACTG CACAGATATA GTGGATGTCA TTATTTCTAC CCTAGACCCG CAAGGTGTAG AGCACCCTAC AATTATTACC GAATCTGGCC GGGCAACTAT CGCCTATTCA TCTGTACTTG TATTCAACGT ATTGGATGTC GCTAAGTTTG AGCCGGCCTC ACCTGTAGAT GAAGTACAAG AAGACGAGCA CGAGCTTATA CACAACTTAA AAGAGTCGCT AGATTCTGTA TCGCTGCGTA ATATTCAAGA GTGCTATAAC GATACCGTTT ACTATCGCGA CGAGATAAGA GAGCTATTTA AACGCGGTCA AATATCTTTG CGCTCTCGCT CACTTGCAGA AAACCTATTT CTACAAACCA TGCACCGCTT GGTGGCACTT GCCGATGATG CCCCGCGCAC CATGCATGAA ATAGAAAAGT TAAAAGAGCA GCTATCTGAT ATTTACTACT GCAACTTCAG TTTGTTCCAG TCGCTGCCAG ATATTTGGGC TATTGATCAA ATTTTCCCAA TCAGCCCTAT TCATCGCTTA AACGAGTTCC CCGATCGCAA CGCGATGATT GCCGATATAA CCTGCGACTG CGACGGCAAG ATAGACCGCT TTAGCAATAT GCACGAAACC CGCAAAACTT TGCCGCTGCA CGATTTAAAA GCAAACGAAG AATATTATAT AGGCGTGTTT TTAGTAGGCG CCTATCAAGA AACGCTGGGC GACTTACACA ATTTGTTTGG CGATACCAAC GTGGTTAGCG TGCGCGTTCA AAAAGATGGC AGCTACGATT TTTCCGACGA AATTGAAGGC GATAGCATTG CCGACGTACT CACCTACGTT GAGTACCAAC CGCAAAACTT ACGCGAGCGG TTCCGCAAAA TTGCAGAGCG CTCTGTTCGC CAAGGCTTCA TTACAGGCGC CGAACGCCAA TCCATAATGA AAACTTTTTC AGATAGCATG ATGGGTTACA CCTACTACGA AAAAGACTAA
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Protein sequence | MKIPFKKGWS IADSTELYGV NDWGVGYFSV SEDGKVIVTP NIDGKTIELP LLNVVSDIKD RGMDVPVLIR FEDLLEEQIG RLNNAFTTAI KASNYQGQYR GVFPIKVNQQ CHVIEEIAEV GAKYGHGLEA GSKPELIIAL AHLESQDACI VCNGYKDAEF IDLGLQACKM GYKCFFVIET PSELPIIIER SRKLGIKPMI GVRVKLASMV GGHWNATSGD RSIFGLSIAQ LIEMVDTLKA EGMLDCLKLL HYHLGSQIPN IRDIRSGVLE ACHVYNELVK EGAAMGYLDL GGGLAVDYDG SKSNYIHSKN YTLDEYCTDI VDVIISTLDP QGVEHPTIIT ESGRATIAYS SVLVFNVLDV AKFEPASPVD EVQEDEHELI HNLKESLDSV SLRNIQECYN DTVYYRDEIR ELFKRGQISL RSRSLAENLF LQTMHRLVAL ADDAPRTMHE IEKLKEQLSD IYYCNFSLFQ SLPDIWAIDQ IFPISPIHRL NEFPDRNAMI ADITCDCDGK IDRFSNMHET RKTLPLHDLK ANEEYYIGVF LVGAYQETLG DLHNLFGDTN VVSVRVQKDG SYDFSDEIEG DSIADVLTYV EYQPQNLRER FRKIAERSVR QGFITGAERQ SIMKTFSDSM MGYTYYEKD
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