| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1595 |
|---|
| Symbol | |
|---|
| ID | 3965662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2050455 |
|---|
| End bp | 2051159 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637920676 |
|---|
| Product | response regulator receiver domain-containing protein |
|---|
| Protein accession | YP_527069 |
|---|
| Protein GI | 90021242 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.000347977 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACT CCTCACAAGC CAACAATCTT TCACCCACAG ATACCTCCGC CTCGCCAGAG
AGTTGCCCTC TCGGCGAGCA TGACTGCCCT ATATACAACC ATATACAACA ACTTGAATCG
CGCATTGCTG AGCTTACCGA GCAGGTAAAC ACCGATTCCT TAACCGGCCT CTACAACCGC
AAGCATTTCA ACGAAAGCAT AGCGCAAGAG TTAGAGCGCA CCCAGCGCAG CCGCCAGCCA
ACATCATTAG CGCTTATAGA CCTAGACCAC TTTAAAGTAG TTAACGACAC CCACGGCCAT
ATAGCGGGTG ATGAAGTGCT TAAGGCTGTC GCCAAAGCAA TTGGCAACAC TATTCGCAAA
CTGGATATCG CCTGCCGCTA TGGCGGTGAA GAAATTGCCG TCATCTTCCC TAGCACCTAT
CAATTAGTTG CCTCGCAAGT CGCGGAGAGG CTAAGACAAG CGATTGAAAA TTGCACAGTA
AACCACGGCG GCAGCACCAT CCCCATTACA GCAAGCATTG GCGTAGATAC CTACACAGCA
CAAAGTAAAG AAACCGCAGT GCAATTTATT GAGCGGGTTG ACCAACTCCT TTATGATGCG
AAGCATCTTG GCCGAAATAG AGTTGCAACA CGCACCTTTT CCTCAGAAAA AGATCCGTCG
CACGTTAGTA GCGCCGAAAA AAGCGCGCTA TTTGATGACG AGTAA
|
|---|
| Protein sequence | MGDSSQANNL SPTDTSASPE SCPLGEHDCP IYNHIQQLES RIAELTEQVN TDSLTGLYNR
KHFNESIAQE LERTQRSRQP TSLALIDLDH FKVVNDTHGH IAGDEVLKAV AKAIGNTIRK
LDIACRYGGE EIAVIFPSTY QLVASQVAER LRQAIENCTV NHGGSTIPIT ASIGVDTYTA
QSKETAVQFI ERVDQLLYDA KHLGRNRVAT RTFSSEKDPS HVSSAEKSAL FDDE
|
|---|
| |