| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1587 |
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| Symbol | |
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| ID | 3965654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2039034 |
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| End bp | 2040689 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920668 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_527061 |
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| Protein GI | 90021234 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.477601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAGA AGCGTCAGGT AATTATTGGG CTTGCGGTAG TGGGAGCTTT GTATGTAGGT
TATGCCATTC TTGGCAAGAA TCCACAGCAA GAACAGTTTG ATAAAGTTGG GCTAAGTAAA
GATGTTGTAC GGCTCGACCA AAATTGGAGC GAAGATATTC GTCAACAGTT TAACTTTACT
ACTTTCGGCT CGAGGCTGAT GCCCTACGAG TGGTTTTTGA ATATAGAAGT GGAAGGTAGT
GAGCAAAAAC TACGTAGCGA TGAAGTGCTA GGGCATTTGG GGTTTATTTT GCAAGATACC
GCTCGCAATA ACCCAGAAGG TTTGCCTGTA GGTTTTGCGG TAGATGATCG CGAAGAGACT
AAATGGGTAG GGCTTACTTG TGCTGCTTGT CACGCGGGTG AAATTACCTA TCAAGACCAA
AAAATATATA TTGATGGCGG CCCAGGGTTA ATGGATTTTA CTGGGTTTGA GCAAACTGTG
TACGGCGCTT TAAAGTCTAC TTACGAAGAT GCAGCGAAGT TTGATCGATT CGCTGCGGCG
CTTAAGCAAA GCTCGCCAGA AGATAAAACC GAATTAAAAG AAACATTAAA ATCGAGAGTT
GATTTTTTTC GCTTAAGGTT AGAAGCAAAT GCTACAGAGG TGCCTTATGG TTATGGGCGC
GTAGATGCAT TTGGTCAAAT CTTTAATGCT ATTGCGGTTG AAGCAATGGA TATTCCTTCT
AACCGCCATG TGCCAGATGG CCCTGTAAGT ATTCCTGTGC TGTGGGACGC ATCGCACTTA
GACCTAGTGC AGTGGAATGC ATCTGCAGCA AACAGCGAGC CAGGCCCATT AGGGCAAAAT
GCGACAACCG CACTGGCTGT GTATGGCCAA ATAGATATGC CCGGCTCTAA GTGGTTTGGT
TATTCTTCCA CCATTGCATT TAGAAATTTG GGATACATTC AAACTAAATT GTATGAGCTC
ACATCACCAG TTTGGCCTGA GCAAATATTG GGTGAAATTG ATAAAACCAA AGCAGCCGCA
GGCAAAAAGT TGTATGAGCA AAACTGTGCT AGCTGCCATA CCGTAATAGA TAGAGCCGAC
CCAACTCGTA AGCTTAAGGC TGGTGCCATT CCGCTAGAGC AAATTGGTAC TGACCCCAAA
ATGGTTGAGA ATTTTGTGAA CGCCAAGGCT AAAACGGGGC CACTGGAAGG GCGCAAATCC
AAATATATTG TTGGGGAGCC ATTCCCAGCA GAAGTGGCTA CATTCGATAT GGTATTGCAG
GCCACTTTAG GTTCTATGAT TCGCCATCCT CTGCAGGCTG TATCGGCGGT GTTAAACGAG
AAGCGTGACG TGTATACCTC TGAACCATTT TTAAAAGAGA AGGTTTATAA GGCTAGGCCG
TTGAACGGTA TGTGGGCAGC GGCGCCGTAT TTACATAACG GCTCTGTACC TACATTGTTC
GATTTGCTGT TACCGGCTAT AGAGCGCCCT GTAAGTTTTT ATGTGGGGAA CAAAGAGCTA
GACCCCGTAA AAGTGGGTTT TGTTACCGAG CAGGGTGAGC ATTCAAATTT GTTTGATACA
ACGCTACTTG GCAACAGTAA TAGCGGTCAT GAATTTGGCG CAGCCCTTAC AGAGGAAGAG
CGCTGGGCGT TGGTAGAATA TTTAAAGACG CTGTAA
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| Protein sequence | MSKKRQVIIG LAVVGALYVG YAILGKNPQQ EQFDKVGLSK DVVRLDQNWS EDIRQQFNFT
TFGSRLMPYE WFLNIEVEGS EQKLRSDEVL GHLGFILQDT ARNNPEGLPV GFAVDDREET
KWVGLTCAAC HAGEITYQDQ KIYIDGGPGL MDFTGFEQTV YGALKSTYED AAKFDRFAAA
LKQSSPEDKT ELKETLKSRV DFFRLRLEAN ATEVPYGYGR VDAFGQIFNA IAVEAMDIPS
NRHVPDGPVS IPVLWDASHL DLVQWNASAA NSEPGPLGQN ATTALAVYGQ IDMPGSKWFG
YSSTIAFRNL GYIQTKLYEL TSPVWPEQIL GEIDKTKAAA GKKLYEQNCA SCHTVIDRAD
PTRKLKAGAI PLEQIGTDPK MVENFVNAKA KTGPLEGRKS KYIVGEPFPA EVATFDMVLQ
ATLGSMIRHP LQAVSAVLNE KRDVYTSEPF LKEKVYKARP LNGMWAAAPY LHNGSVPTLF
DLLLPAIERP VSFYVGNKEL DPVKVGFVTE QGEHSNLFDT TLLGNSNSGH EFGAALTEEE
RWALVEYLKT L
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