Gene Sde_1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1572 
Symbol 
ID3965100 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2019046 
End bp2020143 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content47% 
IMG OID637920650 
Product3-hydroxyacyl-CoA dehydrogenase 
Protein accessionYP_527046 
Protein GI90021219 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2730] Endoglucanase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACAA CCAAATTTCT TGCGCTTGCA CTCTGCTTGC TGGCCTCAGC CAGTGCACTG 
AGTGCAAATA ACAGCGCCCC ATCAAACGAC TGGTGGGATA TACCCTACCC GAGCCAATTC
GATGTAAAAA GCCTTAAAAC GCAAAGTTTT ATATCGGTAA AAGGTAACAA GTTCATTGAT
GATAAGGGCA AAACCTTCAC TTTTAGAGGG GTAAACATTG CCGATACAGG TAAGCTACTT
AGCCAAAATC AATGGCAAAA ATCGCTGTTT GAAGAGCTGG CTAATAACTG GGGGGTAAAT
ACTATTCGCC TGCCTATTCA CCCTGTAAGT TGGCGTAAAC TTGGGCCAGA CGTTTATTTA
GGCCACATCG ATGAGGCGGT ACGCTGGGCG AATGATTTAG GTATTTACCT TATTCTTGAT
TGGCACTCCA TTGGCTATTT GCCCACCGAG CAATACCAAC ACCCCATGTA CGACACCACC
ATTAAAGAAA CCCGCGACTT TTGGCGCAGA ATTACGTTCC GCTACAAAAA CGTGCCCACC
GTAGCGGTAT ACGAATTATT TAATGAGCCA ACCACCATGG GTAACACCCT AGGCGAACGC
AACTGGGCCG AGTGGAAAAC CTTAAATGAA AGCCTAATTG ATATGATATA TGCCAGTGAC
AAAACCGTCA TTCCGCTGGT TGCAGGCTTC AACTGGGCCT ATGATTTATC GCCAATCAAA
AAGGCACCTA TCGAGCGTGA AGGCATTGCT TACGCCGCAC ACCCCTACCC GCAAAAGGCG
AAACCAGAGG TTAAGAACGA TAAAAACTTC TTCAAACTGT GGGACGAAAA GTGGGGCTTT
GCTGCAGACA CCTACCCTGT AATAGCAACA GAGCTAGGCT GGGTACAACC CGATGGTTAT
GGTGCCCACA TACCCGTTAA AGACGACGGC AGTTACGGCC CCCGCATAGT GAAGTATATG
CAGAAAAAAG GCGTTTCTTA CACGGTATGG GTATTCGACC CCGACTGGAG CCCAACAATG
ATTAACGACT GGGATTTTAC CCCCAGCGAG CAAGGCGCGT TTTTTAAACA GGTTATGCTA
GAAGCTAAAA AACGCTAA
 
Protein sequence
MRTTKFLALA LCLLASASAL SANNSAPSND WWDIPYPSQF DVKSLKTQSF ISVKGNKFID 
DKGKTFTFRG VNIADTGKLL SQNQWQKSLF EELANNWGVN TIRLPIHPVS WRKLGPDVYL
GHIDEAVRWA NDLGIYLILD WHSIGYLPTE QYQHPMYDTT IKETRDFWRR ITFRYKNVPT
VAVYELFNEP TTMGNTLGER NWAEWKTLNE SLIDMIYASD KTVIPLVAGF NWAYDLSPIK
KAPIEREGIA YAAHPYPQKA KPEVKNDKNF FKLWDEKWGF AADTYPVIAT ELGWVQPDGY
GAHIPVKDDG SYGPRIVKYM QKKGVSYTVW VFDPDWSPTM INDWDFTPSE QGAFFKQVML
EAKKR