| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1542 |
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| Symbol | |
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| ID | 3965070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1987808 |
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| End bp | 1989745 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920620 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_527016 |
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| Protein GI | 90021189 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTAT TTATTGCCGA AAAACCCAGC CTAGGGCGCG CTATCGCCGA CGTTTTACCA
AAACCCCACT CGCGGGGTGA TGGTTTTATT CGGTGCGGCA ATGGCGACGT TGTTAGTTGG
TGTATAGGGC ATTTGTTAGA GCAAGCCGAG CCCGAAGCCT ATAACCCAGT GTTCAAGCAG
TGGCGTTTAG AGCATTTGCC TATCATTCCC GATCAATGGC AGCTAAAGCC AAAATCTAAA
ACCCGTAAGC AGCTAACGGC TTTGCGCAAA TTGGTGAAGG AAGCCACCTG CATTGTGCAC
GCAGGCGACC CAGATCGTGA AGGGCAGTTA TTAGTCGACC AAGTAATTGA TTTTCTTGGG
GTGAAAGGTG CAAAGCGCGA ATCCGTTCAG CGCTGTTTAA TTAACGATCT CAACCCCGCT
GCCGTTAAAC GCTCCCTCGA TACATTGCGG TCAAATAAAG AATTTATTCC ATTAGCCACG
TCGGCGCTTG CTCGTTCGCG TGCAGATTGG TTATACGGTA TTAACATGAC TCGTGCCTAT
ACCTTGCAAG GGCGTAAAGT GGGGTACGAA GGGCTGCTTT CTGTTGGGCG TGTGCAAACG
CCCATACTGG GTATGGTTGT AGAGCGCGAT AGGGCAATTG AAGAGTTTGT TTCAAAACCG
TTTTACGAAG TATTAGCACA TTTAACCACT TTAACTGGTG AGCCGACTGC ATTTACCGCC
AAATGGTTGC CAAGCGAGGC ATGCGAGCCC TATATGGATG AAGATGGGCG TGTACTTAGC
AAGAAGTTAG CCCAAAACGT TATTGCGCGC ATAACGGGTG AAAATGGCGT TGTCGAAAAA
GTAGATAAAA AAGCCAAAGC ACAAGCCGCG CCGCTTCCTT ATAATTTGTC GTCGTTACAA
ATAGATGCCG CAAAACGGTT TGGCTTTGCC GCACAAAAAG TGCTGGATAT TTGCCAAAAC
CTATACGAAA AACACAAGCT TATTACTTAC CCGCGTTCAG ATAGCCGCTA CTTGCCGGCG
GATCATTGGC ATCAAGCAAA TGACGTTTTG CAAGCAATAT CTGCCAATGT TGCCGAGCTA
GTGCAGTCGG TGAGCGGTGC AAACAGCAAG TTAAAAAGTA AAGCATGGAA TGATGCTAAA
GTGGATGCGC ACCATGCGAT TATTCCAACT GCTAAGAAAG TATCGTTTTC ATCGATAACC
AGCGAAGAGC AAAAGGTATA CAGCCTAATT GCTCGGCAAT ATGTTTGTCA GTTCTACCCC
AAATGGGAAT ATTCTGACAC GGTAATTCAC CTAAAAATAG CTGGCGGACA ATTTGTATCT
AAAGCTCGTT TAACACATAA ACAGGGTTGG AAGGTACTGT TTGAACGAAA GGGAGGTGAG
CCTAACCCTA AAGATGACGA CGAGTTTCCC TCACTTACGC TACCGGATTT ACACGTGGGG
CAGAGTGTTG CCTGCAGGCA GGGCGAGTTA CTAGAAAAGC AAACCCAACC CCCCAAATAT
TTTACCGATG CCAGCCTGCT TGCCGCTATG ACGGGCATCG CGCGTTACGT GACCGACCCC
GATATTAAGA AAATACTTAA AGATACCGAT GGTTTAGGTA CCGAAGCGAC ACGCGCAGGC
ATTATCGAAT TGCTATTTAA GCGCAATTTT CTTGTGCGAA AAGGCAAGCA AATACACTCC
ACCCCCGCAG CCAGGGGCTT GGTAGCGGCC TTGCCTAGCT CCGCCACAAC ACCAGATATG
ACCGCCCAGT GGGAATTGGT ATTAAACGCA ATTTCTATAC GCGAAGCCCA ATACACAACT
TTTATGAAGC CATTGGTTGC TAGTTTGCAA ACCCTTATTG CCGAGAGCCA GCGCAATTTG
CCAATAGGCC TTAAAGGTGT TGCCGCTAAA CCCAAGGCCT TTAAACGCAG GCGCAAGGTA
AAAGCCAAGT CTGTTTAG
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| Protein sequence | MRLFIAEKPS LGRAIADVLP KPHSRGDGFI RCGNGDVVSW CIGHLLEQAE PEAYNPVFKQ
WRLEHLPIIP DQWQLKPKSK TRKQLTALRK LVKEATCIVH AGDPDREGQL LVDQVIDFLG
VKGAKRESVQ RCLINDLNPA AVKRSLDTLR SNKEFIPLAT SALARSRADW LYGINMTRAY
TLQGRKVGYE GLLSVGRVQT PILGMVVERD RAIEEFVSKP FYEVLAHLTT LTGEPTAFTA
KWLPSEACEP YMDEDGRVLS KKLAQNVIAR ITGENGVVEK VDKKAKAQAA PLPYNLSSLQ
IDAAKRFGFA AQKVLDICQN LYEKHKLITY PRSDSRYLPA DHWHQANDVL QAISANVAEL
VQSVSGANSK LKSKAWNDAK VDAHHAIIPT AKKVSFSSIT SEEQKVYSLI ARQYVCQFYP
KWEYSDTVIH LKIAGGQFVS KARLTHKQGW KVLFERKGGE PNPKDDDEFP SLTLPDLHVG
QSVACRQGEL LEKQTQPPKY FTDASLLAAM TGIARYVTDP DIKKILKDTD GLGTEATRAG
IIELLFKRNF LVRKGKQIHS TPAARGLVAA LPSSATTPDM TAQWELVLNA ISIREAQYTT
FMKPLVASLQ TLIAESQRNL PIGLKGVAAK PKAFKRRRKV KAKSV
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