| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1538 |
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| Symbol | |
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| ID | 3965066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1984325 |
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| End bp | 1986190 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637920616 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_527012 |
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| Protein GI | 90021185 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAACG CTGAATCTAC GCAAGATAAA AATCTAGTTA GAGTTAGTAC TGTATTACCC
GATAATGCAC TAATTGCAAC GCGTTTATCT ATTTCTGAAA CCCTGTCGGA AGGTTTTTCT
ATTGTTGTGA CGGCCTTTTC TGAGAAGCGT CACGATTTAA CTGCAGAAGA TTTAGTTGGA
ACGCCCCTCA CTGCAGTGTT AGTTCAGCAA GATAACTCTT TGCGCTATTT TAACGGCTAT
ATTCAAGAAA TTACTGCTAC TGGCAGTGAA CGAGCAGGGC AAAGAAGTAC TTATAAGCTA
ACGGTTGTGT CTTGGTTGCA GTTGTTGTCG GGAAAGCGCA GGGATAATCG TATTTTCCAA
GAGAAAAATG TTAAACAGAT TATAGAAGAA GTGTTCAAGC CCTTAGGGTC TATCGCAGAT
TACAAATTCG ATATTAGTGG CGAGCACCCA GAGTGGCGCT ACTGTACACA ATACGATGAA
ACAGATCTAA ATTTCTTTAA TCGGTTGTGT CAAAGAGAAG GGCTGGCCTA CTATTTTTTA
CATGATAATG GCGCCCATAA ACTGCATATC GTCGATGTGG CTAATATTCG TTCCCTTGCG
GATAACAAGC CTAAAATAGT CGAGATTCAA GCTGGTACAC CAGCTTTTGA TCATTTCTCT
CATTGGCAAA GTACTGGTAA GTTTGTTGCT GGCACGTATA CACAGCGAAC ATATAATTAT
TTAAAGCCTA CGCAGTTAAT TGAAGGCTCG GAAAAAATTA AAGGCGATGC GCTTAAAATC
CCAAAAGTTA CGGATATAGA GTACTACTCC TATAGCGAGC AATTTCATAC CTCGGAAGAG
GGTAAGGGTA GCGTATCTAC AAAAGGTCAT GGTGCCAGTC AGGCTGTGAT TTCGCAGGGA
GCGGGCAACT GTAGGCATTT AAAAGTTGGC CATACTATAC AAGTGGCTCT GCCTGGTGCG
GCAAACTTCG CCGATAAAGG CAAAGAGTTT ACTTTAACGA ATGTTACTAT TAATGCAGAC
GACACCTCTG GTGTAATGAA TTGCTTTGTA GAAGCGTTAC CTAAAGGAAA TTTATTATTT
CCGGCCAGCT CTACCCCAAC CATTAATAGC TTACAAACGG CGGTGGTAAC TGGGCCAAAA
GGCGAAGAAA TACATACCGA TCAATTAGGT CGAATTAAAG CACAGTTTCA CTGGGACCGA
GCCGGTAAAA AGGATGAAAA CTCAACCTGT TGGCTAAGGG TGATGCAGGG CTTTGCTGGG
AACAATTATG GTGCCCACTT TACACCTCGA ATCGGCCACG AAGTGGTTGT GGCGTTTGAA
AACGGCAACC CAGATAGACC ATTTGTTATA GGGTCATTGT TTCACCAAGA GCATAAGCCA
CCGTATTCTG AGCAGCTTGG CTCGCGTTCT GGAGTAAGAA CCCGTTCTAC CAAAGGTGGT
GGCGAAACAA ATTTTAACGA GTTGTACTTC GAGGACACCA AGGGTAAAGA AGAAGTCTAT
TTCCAAGCAG AAAAAGACTT AAACGCTGTT GTAAAAAACG ATGAAACGCG TGAGGTTGGC
AACGATCAAA CATCCGCAAT AAAACACGAT CGTAAAATGG ATGTTGGTAA CGACCATACT
GAAACAATTA AAAATAAGCA GACTATCACT GTTGGTAAAG ATCAACAAAA CAATATTAAG
AATAATCAAA TTACAGAAGT AGGCAAAAAA AGCGTACACA AGGTGGGTAA AGAGTTAGTC
TTGGAAGCGG GCAGTAAAAT TATTCTTAAG GTTGGTGGCA GCTCTATTGA AATTACCGGC
AGTAAAATCG CGATTAATTC GTCTGGTCAA GTGGATGTTG ATGGTGGAAA AGTAAAGTTG
AACTAA
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| Protein sequence | MANAESTQDK NLVRVSTVLP DNALIATRLS ISETLSEGFS IVVTAFSEKR HDLTAEDLVG
TPLTAVLVQQ DNSLRYFNGY IQEITATGSE RAGQRSTYKL TVVSWLQLLS GKRRDNRIFQ
EKNVKQIIEE VFKPLGSIAD YKFDISGEHP EWRYCTQYDE TDLNFFNRLC QREGLAYYFL
HDNGAHKLHI VDVANIRSLA DNKPKIVEIQ AGTPAFDHFS HWQSTGKFVA GTYTQRTYNY
LKPTQLIEGS EKIKGDALKI PKVTDIEYYS YSEQFHTSEE GKGSVSTKGH GASQAVISQG
AGNCRHLKVG HTIQVALPGA ANFADKGKEF TLTNVTINAD DTSGVMNCFV EALPKGNLLF
PASSTPTINS LQTAVVTGPK GEEIHTDQLG RIKAQFHWDR AGKKDENSTC WLRVMQGFAG
NNYGAHFTPR IGHEVVVAFE NGNPDRPFVI GSLFHQEHKP PYSEQLGSRS GVRTRSTKGG
GETNFNELYF EDTKGKEEVY FQAEKDLNAV VKNDETREVG NDQTSAIKHD RKMDVGNDHT
ETIKNKQTIT VGKDQQNNIK NNQITEVGKK SVHKVGKELV LEAGSKIILK VGGSSIEITG
SKIAINSSGQ VDVDGGKVKL N
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