| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1534 |
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| Symbol | |
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| ID | 3965062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1978052 |
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| End bp | 1979887 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920612 |
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| Product | hypothetical protein |
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| Protein accession | YP_527008 |
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| Protein GI | 90021181 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATA CTTTACTTTC CTATTACAAT AGGGAACTTA GTTACGTACG TAAATTGGGC
GCTGAATTTT CAGAGCAACA TCCCAAAATT GCAGGCAGGC TTAGATTAGA TAGTGAAACG
GTGGAAGATC CACATGTTTC TCGATTGATC GAATCATTTG CATTTTTAAC TGCACGCATA
CGGCAAACAA TTGACGACAG TTTCCCTGAG TTAACAGAAG CGTTAATGGG AGTGCTGTAC
CCAGAATTTC ATGCCCCGTA CCCCGCAATG AGTATTGCTC AGATTCGAGT AATAAGAAAA
ACTCCTTCTC CACAAACCAT AGAATGTGGG CGCAAACTAC ATGTAAAAGG GGAGGGTTAC
GGGGATTGTG TTTTTTCTAC TTGTAACGAA CTAGAAGCAC TTCCCGTTAC GATCGAAAAT
ACAAGGGTTG TAAATGCTCC AGCAAAGGCG CCAAATTTGG TTTTACCTGG CAAGGAGCGA
TTGCTGGTAA AGTCAGTACT TTCATTTGAT GTTAAACCAT TTGAAAGTGC AAAAGTTGCT
GAGTTTAAAA ACGACTCTTT AAGCTTGTAT ATCGATGGGC AGTCTCAACT AACGTTTAAG
TTATTTGAGT ATTTGATGCA AGGTACCCTA GGTATTACTA TTGCAAAAAG TGCTATGGAC
CCCAACCCAA TTTGTTTACC TGCAAATCGC TTAGTTGCGA GCGGGCTGCT ACGCAATGGT
GAGGTGTATG GTGATAGCTT CGACGGTAGA ACTTGCGTAA CCTATAAAAA AATAATGGAT
TTCTTTGCGT TTCCAAAGCG ATTTCTTTTT ATCGATTTGG TAGGCATGAG GGAAATATGG
CCCTTGTTTG AATCGGGCTT CAGCGTGTAT TTTTATTTCG ATGAAACAGA CCCTGAGCTG
GTGCAAGGGG TAGATGAGAC AACCCTTCAG CTGGGTTGCG TGCCTATCGT TAACCTTTAT
GAAGGTCGCA TAGAGTACAT CGGTGCAAAA GAAGTGAATC TGGAGTCGAA GCTGGAAGTG
CATCGATCTC TCGCAGATTA CGCAGATGTA CATCATGTTA GCCGAGTGTA CGCCAAAAAT
AATGAAGGTG AAACGAAAGA GCTTTTGCCT TTCTATGGTT CTCATCGTCA AGCACATTCA
ACAGATTCCC CTGTTTATTG GGGCTTGCGA CGAGAAAATA CTCGCTTTGA CAATGGCCGG
GTAAGTGCCG GTACCGATAC CTACATTTCG TTTGTCGATA CTAAATTCGA AGTGGTTAAC
CTGCAAAGCG ACTGGCTTAT TGGAGCAGAT GTTATTTGTA ATAATCGCGA CGTAGCGGCA
AAACTGCCGT TCGGCTCTGA ATTGCCACAT ACCGATTTTA TCGAAGGTGG GGCCGGAATG
CGTGTAAAAC TCACTATACC GGCTACATCG ACTATATCGC CTAAACTTAA GTCGGCCACA
AGGTGGCAAC TTATTGCGCA GCTTACACTG CAGAGCTTCG CCGGCAAAGA TGGGCTGGGT
GTACTAAAAG AAAGTTTACG TTTATACGAT TTAGTGGGTA CTCGAGAATC TCAATCAATG
ATTGACGGCA TTATCAATAT GCATACCTCA CCGAGTACCG CGCGCATTGT TCAGCAGGGC
CGATCCGCGA TATGCCAAGG TACCAAGATA GAGTTGGAGT TCGACGAGCA ATTTTACAGT
GGCAGTAGTG TTGTGCTGTT TGGTCATATT CTCGATGAGT TTTTTGCTCA GTTTTGTGCA
ATAAATAGCT TTACTCAGTT GTCTATTAAA ATAAAACAAA AACCCGGAAG GTTAATAGAA
TGTCCGCCAC GGATAGGTTT TCAGCAGCTT ATATAA
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| Protein sequence | MDDTLLSYYN RELSYVRKLG AEFSEQHPKI AGRLRLDSET VEDPHVSRLI ESFAFLTARI
RQTIDDSFPE LTEALMGVLY PEFHAPYPAM SIAQIRVIRK TPSPQTIECG RKLHVKGEGY
GDCVFSTCNE LEALPVTIEN TRVVNAPAKA PNLVLPGKER LLVKSVLSFD VKPFESAKVA
EFKNDSLSLY IDGQSQLTFK LFEYLMQGTL GITIAKSAMD PNPICLPANR LVASGLLRNG
EVYGDSFDGR TCVTYKKIMD FFAFPKRFLF IDLVGMREIW PLFESGFSVY FYFDETDPEL
VQGVDETTLQ LGCVPIVNLY EGRIEYIGAK EVNLESKLEV HRSLADYADV HHVSRVYAKN
NEGETKELLP FYGSHRQAHS TDSPVYWGLR RENTRFDNGR VSAGTDTYIS FVDTKFEVVN
LQSDWLIGAD VICNNRDVAA KLPFGSELPH TDFIEGGAGM RVKLTIPATS TISPKLKSAT
RWQLIAQLTL QSFAGKDGLG VLKESLRLYD LVGTRESQSM IDGIINMHTS PSTARIVQQG
RSAICQGTKI ELEFDEQFYS GSSVVLFGHI LDEFFAQFCA INSFTQLSIK IKQKPGRLIE
CPPRIGFQQL I
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