| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1528 |
|---|
| Symbol | |
|---|
| ID | 3965056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1971811 |
|---|
| End bp | 1972926 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920606 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_527002 |
|---|
| Protein GI | 90021175 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3515] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03363] type VI secretion-associated protein, ImpA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGT TTAACTCTAA TGAAGAATTG TCTGCCATGC TTGAGCCTTT GCAAGAGGGG
GAGCCTGTCG GGCAAGATTT ACGCGAGAAT ATCTCACCAA CATCTAGCTA CCAAGTACTT
CGCGATGCCC GCACGCTAGC AAGAAATAAT GAGCGTGCTG CGTTAGCGAG TGGCGAAAGT
ATGTACTTTC ATATGCCAGA TTGGACGCTA ATTCTCGAAA AAGTGCCTGA GGTTTTAAAG
ACAGAAAGTA AAGATATAGA ACTAGTAGCT TGGTATATAG AAGGTTTAAC TCGGTTTCAC
GGTTTTGCTG GGCTTGCTTC AGGTTTTAGT ATTGCTAGGC AGCTTATAGC AAGCTTTGGC
GAAGCATTGT ACCCGCGGCC AGATGAGGAT GGCATTGCTA CACAGCTGGC ACCACTTATA
GGTTTGAACG GGTTCGGTTC GGAAGGCGCC TTGATTGCCC CGATTAAATC TATACCCATT
ACTCAGGGAG ATTACCCTGG CCCACTAGCC ACGTGGGAGT GTGAACAAGC CTTTGAGTTA
GCTCGAATTA CTGACCCTGA CAAGCGTGAA GCTCGACTAA AGCAGGGCGG AGTATCTCGC
GAGGCATTGG ATCAGGTTGT TGCGCAAACC AGTACTGAAT TTTTGCAGAA AATGCATGCA
GATATAAGCG CAGCAATCTA TGAGTTTGAG TTGTTTCAAC AGCAGATAGA TGCATACTGC
CCGAATGATC CTCAGCCAAC CGGTAAAATT AAAGAAGCAT TAAAAGCCTG CTTGCAAACA
TTCCAATATA TTGCTGGCGA TAGAATTCAA AGTGAGGCCA GTGAAGTCGA GGCTATGCAA
GAGCAGGAAG AAACCGGCGG GCAACCCGCT GCCGATTCGC AGGTTAACCT AAATGCAAAA
ATTGTCGATC GGCAGCATGC GTTGAAGTTA TTGCGAGAGG TTGCAGACTT TTTTAGAAAA
ACCGAACCAC ATTCCCCTAT ATCTTACTCG GTTGAGCAAA CGATACGTTG GAGCTCGTTA
CCGCTTACAG AGCTTATTAA AGAATTGATC CCAGAAGAGT CCGCAAGAAA AAAATATCAG
AACCTTTCTG GAATGTCGAT GAGTGGGCAA GATTAG
|
|---|
| Protein sequence | MELFNSNEEL SAMLEPLQEG EPVGQDLREN ISPTSSYQVL RDARTLARNN ERAALASGES
MYFHMPDWTL ILEKVPEVLK TESKDIELVA WYIEGLTRFH GFAGLASGFS IARQLIASFG
EALYPRPDED GIATQLAPLI GLNGFGSEGA LIAPIKSIPI TQGDYPGPLA TWECEQAFEL
ARITDPDKRE ARLKQGGVSR EALDQVVAQT STEFLQKMHA DISAAIYEFE LFQQQIDAYC
PNDPQPTGKI KEALKACLQT FQYIAGDRIQ SEASEVEAMQ EQEETGGQPA ADSQVNLNAK
IVDRQHALKL LREVADFFRK TEPHSPISYS VEQTIRWSSL PLTELIKELI PEESARKKYQ
NLSGMSMSGQ D
|
|---|
| |