Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1526 |
Symbol | |
ID | 3965054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1967820 |
End bp | 1969016 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637920604 |
Product | FHA domain-containing protein |
Protein accession | YP_527000 |
Protein GI | 90021173 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
TIGRFAM ID | [TIGR03354] type VI secretion system FHA domain protein |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTTAC GAATAGATGT AAAAAATCAT GATGCATTGG ATACGAATGC ACCTAAATTT ACTTTGTTTG GGATGGATGG CGGCAAGCTA GGAAGAAGCT CTGAGTGCGA ATTATATTTA CCTTGCGAGG AAAAATCCGT ATCGAGAGTG CATGCAGAAA TTCGCTTGGA AGACTGCGCA TTTTTATTAA TAGACCGTAG CATTAACGGC GTTTATATCA ACAAATCTAA CGAGCCCTTA GGTATGGGCA AGCGCCACCC AATAAAACAC GGCGATGTAT TTCAAATTGG AAACTATGAA TTAGAAGCCA ATTTTGATGT GGAAGAAGAC GATATACCAG CTTTTGCACC AAGTACAAAT CAAGCTAATA TTGTTTTAGA CAATAACGCA GTTACAACCC AACCCGCCAC ATCGGACATA GCCGATGCCC GTATTGATTT TGGCTCGACC ACCGATCAAT TCACACCACC CACGACTATT ATACCCAAGG ACTGGGACCT AGATTTAGCA TCCCCCGAAC TACCTGCCGC AAAACCGGAA AAAGCCCAAG TTATAGATTT TTCTAACAAA AAATCAAAAC TAATAGAAAG CCTACTTAGC GGGCTAGCAC CCGAGTCGAA ATTCACCGCA GACCAAATAA CTCCCGAAAC GGCCCAGTTG TTAGGCAAGG CATTACGCAT TTCGCTGATG GGCGCTGTCG CGCAGCGACG TGTATTACAA GAGGCTAAAA GCAAAGCTTG CCTAGACGAA ATACCCACTG AACGCCAAAT GGAAGCAGAC GCTTTGGGCA GCTTTCCAAA CGCGGATTCA ATTATTGAAG CACTACTAGA TACAAGGCAT CGGGATCAGA AAAAAATACC GTCACTGCTA AGTGCAACAC TTAAATACAA CTTGGAAGAT CAAATCGAGC TCAACGCGGG CTATCAAGCA GCAATAACTA AAGCACAACA GTGTTTAGCC CCCGTGGAAA TCGAAAAGGC ACTAGAAAAA GCTCACAAGG CACACGCTCA AAAAAATAGC GCGATAGAAA GCCTTAGTAG TAAATTTATG TCGCAATCTA AAAAGTGGAG TTTCTACACC GCAAATTGGG CAAAAATTTG CGAGAAAGCT AGCGCTCAAA TAGGTAAAGA CTTTGAAACT AAAACGCTGC TAGCCCACGC AAAACGTATG CGGGATAAAA ACAATGCAAC CAAATAA
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Protein sequence | MALRIDVKNH DALDTNAPKF TLFGMDGGKL GRSSECELYL PCEEKSVSRV HAEIRLEDCA FLLIDRSING VYINKSNEPL GMGKRHPIKH GDVFQIGNYE LEANFDVEED DIPAFAPSTN QANIVLDNNA VTTQPATSDI ADARIDFGST TDQFTPPTTI IPKDWDLDLA SPELPAAKPE KAQVIDFSNK KSKLIESLLS GLAPESKFTA DQITPETAQL LGKALRISLM GAVAQRRVLQ EAKSKACLDE IPTERQMEAD ALGSFPNADS IIEALLDTRH RDQKKIPSLL SATLKYNLED QIELNAGYQA AITKAQQCLA PVEIEKALEK AHKAHAQKNS AIESLSSKFM SQSKKWSFYT ANWAKICEKA SAQIGKDFET KTLLAHAKRM RDKNNATK
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