Gene Sde_1525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1525 
Symbol 
ID3965053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1967303 
End bp1967797 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content43% 
IMG OID637920603 
Producthypothetical protein 
Protein accessionYP_526999 
Protein GI90021172 
COG category[S] Function unknown 
COG ID[COG3521] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03352] type VI secretion lipoprotein, VC_A0113 family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAAACA TAGCTATTGC TGTGGCGGTA CTTATTGGCT TCACCGGCTG CGCAGCAACA 
AACTATATAG TATCTCCGTA CGACAAGTTA ACGGTAATAG CCAATAAAGA CGTTAACCCA
GATGGCAGTG GTAGACCCTC CCCCATTCAA ATTAAGGTAT ACCAACTTAC ATCTCGCACA
ACACTCGACA ATTTAGATTT CGATAAATTA TTTTATCGCG GGGAAGATTT CTTAAGTGAC
GAACTTCTGG AGCAAAAAGA ATTTATTCTT CAACCCAAAG AAGAGCTCAA GCACGAAATA
GCCTTAGTTA GCGGCGTTAC CCATATTGCT GTGCTCGCCG CCTACAGAGA CATTGATTCT
ACGCGTTGGA AGCACCTATA TAAGATAAAT GATACCGGCT ATTACTCACA TAAAATAATG
GTCACTCAGC AAGGGCTCGT TGACGTTCCA AAATCTCAGA AGAAACAACA GCGACGGCGC
AGAGAACGCG ACTAA
 
Protein sequence
MANIAIAVAV LIGFTGCAAT NYIVSPYDKL TVIANKDVNP DGSGRPSPIQ IKVYQLTSRT 
TLDNLDFDKL FYRGEDFLSD ELLEQKEFIL QPKEELKHEI ALVSGVTHIA VLAAYRDIDS
TRWKHLYKIN DTGYYSHKIM VTQQGLVDVP KSQKKQQRRR RERD