| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1489 |
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| Symbol | |
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| ID | 3965226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1917782 |
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| End bp | 1919593 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920566 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_526963 |
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| Protein GI | 90021136 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.536233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0818763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCA ATACTCCGCT AAACATACTG CAACACACCT TTGGCTACGA GGCTTTCCGC
CAACCACAGC AAGATATTAT AGATTGCGTA TGCCAAGGCG GCGATGCCCT TGTCATAATG
CCCACAGGGG GCGGTAAATC CCTTTGTTAC CAAATTCCCT CGCTAGCACG AAGCGGCGTA
GGTATTGTGG TGTCGCCCCT TATCGCATTA ATGGAAGACC AAGTAAATGC CCTTAAGGAA
TTAGGCGTAA ACGCCGGCTA CTTAAACTCC GCACTCGATT TACGAACTGC GCAACAGGTA
GAACAAGACC TAATAAGTGG CGAACTAGAT TTACTTTACA TTGCCCCAGA ACGGCTAGTG
CAACCGCGCA CCCTCGCCCT TTTGGCACAG GCGCCACTCG CCTTATTTGC TATAGATGAA
GCGCACTGCG TGGCGCAATG GGGGCACGAT TTTCGCGCCG ACTACTTAAG TTTAAATATA
TTGCATGAGC GGTTCCCCAA TGTGCCGCGC ATTGCACTTA CCGCCACCGC CGACCAACGC
ACGCAAGCAG AAATTGTCGA GCGCTTAAGC TTAAACAATG CACAACAATT TATAAGCGGG
TTCGACCGAC CCAATATTCA ATACCGCATT CAACAAAAAG ATAAGCCTCG CAACCAATTA
CTTAATTTTT TACAGTTAGA GCAAGCGGGC AATGCCGGTA TTGTTTACTG CCTGTCACGT
AAAAAAGTAG AAGAAACCGC TGCGTGGTTA GTTACCCAAG GCTACGATGC GCTGCCCTAC
CATGCGGGGT TACCCGCGGC TACTCGGCAA CAAAATCAAA TGCGTTTTTT GCGCGACGAC
AATGTAATAA TTGTTGCAAC CATTGCCTTT GGTATGGGTA TAGATAAACC CGACGTGCGT
TTTGTTGTGC ACTTAGATAT GCCCAAAAGT GTAGAGGCCT ACTATCAAGA AACAGGCCGC
GCAGGGCGCG ATGGCGACGC CGCAACCGCT TTGCTTTTAT ACGGCTTAGA AGACGTGGTT
AAACTGCAGC AAATGATGGC CACATCGGAG GGCAGCGAAG AGTTCAAACG CCACGAACAA
CAGCGCCTAA GTGTCATGCT GGGCTTGTGC GAGATAACCA CCTGCCGCCG CGCAACCCTA
CTGCGCTATT TTGGCGACGA GCTGCCCCAC CCTTGCGGTA ATTGCGACAA CTGCTTGCAA
CCCGCCGACA CCTGGGACGC CAGTGAACCC GTACGCATGG CTTTAAGCTG TGTTTACCGC
AGCGAGCAGC GCTTTGGTGC ATCGCACGTT ATAGATATTT TGCGTGGCTC CGACAACGAG
AAAATACGTA AATTCGGCCA CGATAAATTA TCAACTTACG GCATAGGTAA AGGGCTAGCC
ATTACCGAAT GGCGATCTAT TTTTAGGCAG CTGGTTGCAC GCGGTTACCT AACCGTCGAC
CCTAATGGGT ACGGTAGTTT GATTCTTACA GAAAGTTGCC GACCAATATT ACGCGGCGAA
GAACCAATAG AATTACGCAA AGATAAAGCC ACCTTAAAAG CCCCCTCTGT GCGTAAACGT
TTATTAGATA TTGATGAAGC CGACATGGGA TTATGGAATG CCTTGCGACG GGTACGCAAA
GAATTAGCCG ATGAACACGG CGTGCCCCCC TACGTAATTT TTCACGATGC CACGCTAAAA
GAAATGATAG AAAAGCGCCC CATGAACGAT TCAGAGCTCT TGTGTATTTC TGGTATTGGC
GACAGAAAAC TTGAACAGTA CGGCGGCGAG TTTTTAGAAG TGTTACGCGA ATATGAATAC
GCGCAAGACT AG
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| Protein sequence | MTANTPLNIL QHTFGYEAFR QPQQDIIDCV CQGGDALVIM PTGGGKSLCY QIPSLARSGV
GIVVSPLIAL MEDQVNALKE LGVNAGYLNS ALDLRTAQQV EQDLISGELD LLYIAPERLV
QPRTLALLAQ APLALFAIDE AHCVAQWGHD FRADYLSLNI LHERFPNVPR IALTATADQR
TQAEIVERLS LNNAQQFISG FDRPNIQYRI QQKDKPRNQL LNFLQLEQAG NAGIVYCLSR
KKVEETAAWL VTQGYDALPY HAGLPAATRQ QNQMRFLRDD NVIIVATIAF GMGIDKPDVR
FVVHLDMPKS VEAYYQETGR AGRDGDAATA LLLYGLEDVV KLQQMMATSE GSEEFKRHEQ
QRLSVMLGLC EITTCRRATL LRYFGDELPH PCGNCDNCLQ PADTWDASEP VRMALSCVYR
SEQRFGASHV IDILRGSDNE KIRKFGHDKL STYGIGKGLA ITEWRSIFRQ LVARGYLTVD
PNGYGSLILT ESCRPILRGE EPIELRKDKA TLKAPSVRKR LLDIDEADMG LWNALRRVRK
ELADEHGVPP YVIFHDATLK EMIEKRPMND SELLCISGIG DRKLEQYGGE FLEVLREYEY
AQD
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