Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1486 |
Symbol | |
ID | 3965223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1912338 |
End bp | 1913333 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637920563 |
Product | tRNA-dihydrouridine synthase A |
Protein accession | YP_526960 |
Protein GI | 90021133 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000110774 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.294797 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATTCTG ACAAAACACC TACAACGTTC GACAGCCACC GCTTTTGCCT TGCTCCGATG ATGGACTGGT CAGACAAACA CTGCCGCTAC TTTTGGCGCC AATTAACTAA AAAATCGCGC CTTTATACCG AGATGGTTGT TACTGGCGCC ATTATTCACG GCGACCGCGA ACGTTTTTTA CAATTCAATA ACGCCGAGCA CCCCATTGCA CTGCAAGTGG GTGGCAGCGA CCCCGCCGCA TTGGCCCAAT GCGCGCGTAT AGCGCAGGAT TGGGGCTACG ACGAAATTAA CCTTAATTGC GGCTGCCCTA GCGACCGCGT ACAAAATGGC ATGATTGGCG CCATTTTGAT GTCTAAACCC GAACTCGTTG CCGAGTGCAT AGACGCCATG CAAAAGGCCT GTGATATTCC AGTAACCGTC AAACACCGCA TTGGTATTGA CGATATGGAA GATTACGAAG CGCTTAGCAA CTTTGTAACA ACCGTTGCCC AAACGGGCTG TAACACCTTT ATAGTGCATG CCCGCAAAGC GTGGCTAAAA GGGTTAAGCC CCAAAGAGAA CCGCGAGATT CCCCCGCTGC GCTACGATTT AGTAGTGCAA CTTAAAAAGG CTTTCCCACA CTTAAACATT GTTATAAACG GCGGCATTAA CTGTTTAGAG CAAGCCAAAA CCCTTTTAAA CGACCTCGAT GGCGTAATGA TTGGCCGCGA GGCGTACCAC AACCCCTTCT TTTTGGCGGA TGTAGACCAA AAGCTATTTG GTACCCCTAA CCCCAGCGCC AATCGCCACG AAGTGTTAGA TAAATTTATT CACTACGCCG AACAGCAAAA CGCCGCCGGT ACGCGCTTAC ACCATATGTC GCGTCACATT TTGGGCTTAT ATTTAGGCCA AAAAGGCGCT AGGGCGTTTC GCCGTCATAT CACTATTCAC GCAGCTAACC GCGAAGCGAG CGCTGTGGTG CTGCGAGAAG CCAAACAATT GGTAGATATA GGCTAA
|
Protein sequence | MNSDKTPTTF DSHRFCLAPM MDWSDKHCRY FWRQLTKKSR LYTEMVVTGA IIHGDRERFL QFNNAEHPIA LQVGGSDPAA LAQCARIAQD WGYDEINLNC GCPSDRVQNG MIGAILMSKP ELVAECIDAM QKACDIPVTV KHRIGIDDME DYEALSNFVT TVAQTGCNTF IVHARKAWLK GLSPKENREI PPLRYDLVVQ LKKAFPHLNI VINGGINCLE QAKTLLNDLD GVMIGREAYH NPFFLADVDQ KLFGTPNPSA NRHEVLDKFI HYAEQQNAAG TRLHHMSRHI LGLYLGQKGA RAFRRHITIH AANREASAVV LREAKQLVDI G
|
| |