Gene Sde_1485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1485 
Symbol 
ID3965222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1911176 
End bp1912108 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content47% 
IMG OID637920562 
Producttransaldolase B 
Protein accessionYP_526959 
Protein GI90021132 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000365093 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.591576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAACA AGTTAGAACA ACTTAAGCAG TTTTCCAGCG TAGTAGCCGA CACGGGCGAT 
ATCGAAGCCA TTAAGCGCTA CCAGCCTTTA GATGCAACCA CCAACCCATC GTTGCTATTT
AAAGCCGCGC AATTGCCACA GTACGCCCCT CTTCTAGAAA AGGCATTGGC AGAATCTAGC
TCTATTGATG ACGCCTGTGA CCGTCTAGCT GTAGCGATTG GCTGCGAAAT TCTAAAAATC
GTTCCTGGCC GCGTTTCAAC CGAAGTAGAT GCGCGTTTGT CTTTCGATAA AAACGCGTCT
ATTGATAAAG CCCACCGCTT AATTGATATG TACGAAGCAA ACGGCATAGG CAAAGAGCGC
GTACTTATTA AGCTGGCTTC AACCTGGGAA GGCATTCGTG CGGCCGAGCA ACTTCAAAAA
GAAGGCATCG ACTGTAACCT AACGTTGTTA TTTAGCTTCA GCCAAGCCGC CGCTTGTGCC
GACGCCGGTG TTTTCTTAAT TTCGCCATTT GTGGGCCGTA TTTTGGATTG GTACAAAGCC
AATACCGATA AAAAAGAATA CTTACCACAC GAAGACCCAG GCGTAATTTC GGTAAGCCGC
ATTTACAACT ACTACAAGCA GCACGACTAC AAAACCGTTG TTATGGGCGC AAGCTTCCGC
AACACCGGTG AGCTTGAAGA GCTAGCAGGC TGTGACCGCT TAACAATTAG CCCAGACCTA
CTAGAAGCAC TTGCGCAAGA TACAGGTAAA CTAGAGCGTA AATTGTCGCC AGAAAACAGC
GGCGAGCCTA TTGCTAAGCT TATCGAAAAC GAGTCGCAAT ACCGCTTCTC GAATAACGAA
GATGCTATGG CTACCCACAA GTTGGCCGAA GGTATTCGCA ACTTTGCTAA AGATCAGATC
AACCTTATTA ATCTTCTAAA AAGCAAAGCC TAG
 
Protein sequence
MTNKLEQLKQ FSSVVADTGD IEAIKRYQPL DATTNPSLLF KAAQLPQYAP LLEKALAESS 
SIDDACDRLA VAIGCEILKI VPGRVSTEVD ARLSFDKNAS IDKAHRLIDM YEANGIGKER
VLIKLASTWE GIRAAEQLQK EGIDCNLTLL FSFSQAAACA DAGVFLISPF VGRILDWYKA
NTDKKEYLPH EDPGVISVSR IYNYYKQHDY KTVVMGASFR NTGELEELAG CDRLTISPDL
LEALAQDTGK LERKLSPENS GEPIAKLIEN ESQYRFSNNE DAMATHKLAE GIRNFAKDQI
NLINLLKSKA