Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1485 |
Symbol | |
ID | 3965222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1911176 |
End bp | 1912108 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637920562 |
Product | transaldolase B |
Protein accession | YP_526959 |
Protein GI | 90021132 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000000365093 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.591576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAACA AGTTAGAACA ACTTAAGCAG TTTTCCAGCG TAGTAGCCGA CACGGGCGAT ATCGAAGCCA TTAAGCGCTA CCAGCCTTTA GATGCAACCA CCAACCCATC GTTGCTATTT AAAGCCGCGC AATTGCCACA GTACGCCCCT CTTCTAGAAA AGGCATTGGC AGAATCTAGC TCTATTGATG ACGCCTGTGA CCGTCTAGCT GTAGCGATTG GCTGCGAAAT TCTAAAAATC GTTCCTGGCC GCGTTTCAAC CGAAGTAGAT GCGCGTTTGT CTTTCGATAA AAACGCGTCT ATTGATAAAG CCCACCGCTT AATTGATATG TACGAAGCAA ACGGCATAGG CAAAGAGCGC GTACTTATTA AGCTGGCTTC AACCTGGGAA GGCATTCGTG CGGCCGAGCA ACTTCAAAAA GAAGGCATCG ACTGTAACCT AACGTTGTTA TTTAGCTTCA GCCAAGCCGC CGCTTGTGCC GACGCCGGTG TTTTCTTAAT TTCGCCATTT GTGGGCCGTA TTTTGGATTG GTACAAAGCC AATACCGATA AAAAAGAATA CTTACCACAC GAAGACCCAG GCGTAATTTC GGTAAGCCGC ATTTACAACT ACTACAAGCA GCACGACTAC AAAACCGTTG TTATGGGCGC AAGCTTCCGC AACACCGGTG AGCTTGAAGA GCTAGCAGGC TGTGACCGCT TAACAATTAG CCCAGACCTA CTAGAAGCAC TTGCGCAAGA TACAGGTAAA CTAGAGCGTA AATTGTCGCC AGAAAACAGC GGCGAGCCTA TTGCTAAGCT TATCGAAAAC GAGTCGCAAT ACCGCTTCTC GAATAACGAA GATGCTATGG CTACCCACAA GTTGGCCGAA GGTATTCGCA ACTTTGCTAA AGATCAGATC AACCTTATTA ATCTTCTAAA AAGCAAAGCC TAG
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Protein sequence | MTNKLEQLKQ FSSVVADTGD IEAIKRYQPL DATTNPSLLF KAAQLPQYAP LLEKALAESS SIDDACDRLA VAIGCEILKI VPGRVSTEVD ARLSFDKNAS IDKAHRLIDM YEANGIGKER VLIKLASTWE GIRAAEQLQK EGIDCNLTLL FSFSQAAACA DAGVFLISPF VGRILDWYKA NTDKKEYLPH EDPGVISVSR IYNYYKQHDY KTVVMGASFR NTGELEELAG CDRLTISPDL LEALAQDTGK LERKLSPENS GEPIAKLIEN ESQYRFSNNE DAMATHKLAE GIRNFAKDQI NLINLLKSKA
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