Gene Sde_1432 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1432 
Symbol 
ID3966110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1850822 
End bp1851601 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content43% 
IMG OID637920509 
Producthypothetical protein 
Protein accessionYP_526906 
Protein GI90021079 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR02521] type IV pilus biogenesis/stability protein PilW 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAC ATATTAAGGT TGCTGTAATT GCAGGTTTGT TACTAGTGCT AGGCGCGTGT 
GTAACAACCA CCAACGAGCC CAAAAGCAAA ATTAATGTTC AAGATGCATT AGAAGCCAAT
GTTAAATTGG GCATGACCTA CCTACAAAAA GGCGATAGAG AAAACGCCTT GCGCGCATTT
AGTAAAGCGC TGGAAACAGA CAAAAAATCT GCCGAGGCTA ACCAAGGTTT GGCTTTGGTA
CACCAGCTTA ATGGTGAAGT GGAAGCTGCA GAGAAAAGCT TTCAAAAAGC GCTAAAAGGC
CGGGCGGATT TTTCTATGGC AGGGGTAGAG CTTAGCTATG GCCGTTTTCT GTTTGAGCAG
GAGCGCTACA AAGAAGCTAA AGAACACTTC GAAATGGCCA GCCAAGATTT AACCTTTCAA
AGCCGTGCTA ATGCTTTGTA TTTTGTGGGG TTAACGTCAC AAAAAATAGG TGATGAAGTG
CGTGCTTTGG CCGCTTTTCA GCACGCGTTA AACCTCAATC CACGCTTGGC ACCAGCGGCT
ATTGAGTTGG CTGAGTACTC GTTTGCCGAA CGAGATTACG CGAGCGCTAA AAAATATTTA
GATCAATTTG TGCGTTCTAA TAATCGCCAA ACTCCGCGTA GCTTATGGTT GGGCATTCGT
ATTGAACGAA TTTTTGGAAA CAAAGATAAA GAAGCCAGTT ACGCGCTTGC TTTAAAAAAT
ATGCACCCGT ATTCCAAAGA GTATTTAGAG TACAAAAATT TGATAGAGGA GAATCAATAA
 
Protein sequence
MIKHIKVAVI AGLLLVLGAC VTTTNEPKSK INVQDALEAN VKLGMTYLQK GDRENALRAF 
SKALETDKKS AEANQGLALV HQLNGEVEAA EKSFQKALKG RADFSMAGVE LSYGRFLFEQ
ERYKEAKEHF EMASQDLTFQ SRANALYFVG LTSQKIGDEV RALAAFQHAL NLNPRLAPAA
IELAEYSFAE RDYASAKKYL DQFVRSNNRQ TPRSLWLGIR IERIFGNKDK EASYALALKN
MHPYSKEYLE YKNLIEENQ