Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1432 |
Symbol | |
ID | 3966110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1850822 |
End bp | 1851601 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637920509 |
Product | hypothetical protein |
Protein accession | YP_526906 |
Protein GI | 90021079 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAAC ATATTAAGGT TGCTGTAATT GCAGGTTTGT TACTAGTGCT AGGCGCGTGT GTAACAACCA CCAACGAGCC CAAAAGCAAA ATTAATGTTC AAGATGCATT AGAAGCCAAT GTTAAATTGG GCATGACCTA CCTACAAAAA GGCGATAGAG AAAACGCCTT GCGCGCATTT AGTAAAGCGC TGGAAACAGA CAAAAAATCT GCCGAGGCTA ACCAAGGTTT GGCTTTGGTA CACCAGCTTA ATGGTGAAGT GGAAGCTGCA GAGAAAAGCT TTCAAAAAGC GCTAAAAGGC CGGGCGGATT TTTCTATGGC AGGGGTAGAG CTTAGCTATG GCCGTTTTCT GTTTGAGCAG GAGCGCTACA AAGAAGCTAA AGAACACTTC GAAATGGCCA GCCAAGATTT AACCTTTCAA AGCCGTGCTA ATGCTTTGTA TTTTGTGGGG TTAACGTCAC AAAAAATAGG TGATGAAGTG CGTGCTTTGG CCGCTTTTCA GCACGCGTTA AACCTCAATC CACGCTTGGC ACCAGCGGCT ATTGAGTTGG CTGAGTACTC GTTTGCCGAA CGAGATTACG CGAGCGCTAA AAAATATTTA GATCAATTTG TGCGTTCTAA TAATCGCCAA ACTCCGCGTA GCTTATGGTT GGGCATTCGT ATTGAACGAA TTTTTGGAAA CAAAGATAAA GAAGCCAGTT ACGCGCTTGC TTTAAAAAAT ATGCACCCGT ATTCCAAAGA GTATTTAGAG TACAAAAATT TGATAGAGGA GAATCAATAA
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Protein sequence | MIKHIKVAVI AGLLLVLGAC VTTTNEPKSK INVQDALEAN VKLGMTYLQK GDRENALRAF SKALETDKKS AEANQGLALV HQLNGEVEAA EKSFQKALKG RADFSMAGVE LSYGRFLFEQ ERYKEAKEHF EMASQDLTFQ SRANALYFVG LTSQKIGDEV RALAAFQHAL NLNPRLAPAA IELAEYSFAE RDYASAKKYL DQFVRSNNRQ TPRSLWLGIR IERIFGNKDK EASYALALKN MHPYSKEYLE YKNLIEENQ
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