| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1428 |
|---|
| Symbol | |
|---|
| ID | 3966106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1846295 |
|---|
| End bp | 1848430 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637920505 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526902 |
|---|
| Protein GI | 90021075 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGGG CTATTCGCTT GCTGTTTACC CTGCTGTTAC TCGCTGTATT TGCAATAATT
GGCCTAGCTG CTCTCATACT CACCTTAGAT ATAAACCGGC TAAAGCCCAT TATTCAAACT
CAGCTAGAGA AACAAGACAT TAGCGCCACA TTTACTGGCG ACCTAAGCTG GACTCTCTAC
CCCTCTCTTG CCATTAAAGC GAATGACATT GCGCTTAAAC ACGCACAAAA CAACCAAAAT
TTAGCTCAAA TAGGCGGGGC GGTTTTTTCT GTTAAATTGA TGCCGCTATT ACAACGCAAC
ATTGAAGTAA ATGAGCTTTC GCTTACCAAC AGCGAAATAT GGTACGCACC CAATACGCTT
GAATTACTTA GCGGAAACAC CACAACTGCA CTCGCAACGA ATAATAGTGA CAACCCGAGC
AACGAGAGCG AGTCAGCCTC GCAACAAATA AATTTAGCCA TATTAAAAGT GGCTGCAAAC
AACGTAACAG CCCATGTAAC GGGCGAAGAT AACACCACAA GCGACTTCAC CATTGAGCAA
TTTACAGCCT ACGATATTAA CTTGGAGGGC CAAAGCTTTC CGCTTGAATT AAAAACAATC
ATTGCGCTTC CACAACAGCC CGTAATACGC ACATTTGCCG CCGGTCGCAT CGCGATTTCG
CCAAGCACCA GCTCCCTCAC CTCGTCCGAG CTAGAGGCAA CTATAGAGTT TGGCGCAGCA
CAGGCCGCAC AAAGCAAAAA TGCTCAGCTA ACGGTAACAA CTGCAAACAC TACGCTTAAT
TGGGCACAAG ATTTAGACCT TACAACCACG CTAGCTATTA GCTCGCCGAA TGTACGCGAC
CTGCTAAAAG CACTAAATAT AGAAATAGAT ACCCACAACC CGCAGGTATT AAACGGGCTT
GAAATCAACA GCGATATAAC CCTAAAGCAA CAGCAATTAG CGTTAGATAA CATTAAGCTC
TCGTTAGACA AAACACGCGC GACAGGCAAC ATCAAAGTAA ACCTTGCCCA AAACACCGGT
CTACCACCTA CTGCCGTTAA CCTCGCCATT GGCGAAATTA ATGTGGACGA CTATTTGCCC
ACACCTGTAG ATGTAGAAAC CGCGCCAACT GACAGTGCCC CCACGCCGCT GCCTATTGAG
CTAATAAATC AACTCACAAC CCAAGCAAGT GTTAGCATTG AATCTGCCAC GGTTAAAAAA
ATTGCAATCA GCAAAATCGC AACCGAAATA GAAGCCCATG CGGGTAACAT AAATATTAAA
AAGCTTAACG CTAAATTATT TGATGGCGAG ATAAACACTA ACGCCGTCGC CCGCACCAAT
AACGATTCCC TAGCTATTAG CGGTGAAACG AAGGTTAAAC AACTAGATTT ACAAAAAACG
CTTATCCACT TTGCCGACTT TAAAAACATA GAAGGCAATG CCAATAGTAC CGTACAATTT
AGCACCAGCG GTACTACCGA CAAACAGCTC ACAGACAACC TAAGCGCCGA TACAGAAGCG
ACCATTCCAA AGCTTATTTT TTCGCCTTTC AACCTAGAAA AACAATATTG CGAAGCGCTA
GCTTGGATAG AAGAAAAACA AGGTAAAACC AACGCTGACC AAAACATCGC AGCTAAGCAA
TGGCAGGCCT ACACGCAGCT AGAGCCCGTA AAACTGGCAG CCAACTTACG TGGCACAGAA
GTAAATGTAA GCACATTAAG TGCAGACATC GAAAAAATTC AAGCGGCAGC TAAAGGCACG
CTCAACTTTG CGACGGGCGC GTTTTCGTTT CCTATCGACC TCTCGCTGGC CAACTTTTCT
AGCGCGCCAG ATAGCTGCAG CAATATTGAT AAAAAATGGC GTGAGCTATC CCTGCCACTT
ATTTGCAAAG GCAAACTCGA CAGTATAAAT GCCAAAACAT GCCTGCCAGA TACCAAACGA
ATAAACAAAA TTATTGAGGC AAAGGTAAAC GCCAAAGTAA ATGAAGCGAA AGAAAAGGCA
AAAGCCGAGC TGGATGAAAA GCTAGAAAAA GAGAAAGCCA AACTTAAAGA ACAGGCCGAC
GATAAAATTA AAGATGCTCT CGAAGACCTT AAAAAAGATA AAAAAGCTAA AGAACTCGAA
GATAAACTCA AGCAACTATT AGGTAACGGA AAATGA
|
|---|
| Protein sequence | MKWAIRLLFT LLLLAVFAII GLAALILTLD INRLKPIIQT QLEKQDISAT FTGDLSWTLY
PSLAIKANDI ALKHAQNNQN LAQIGGAVFS VKLMPLLQRN IEVNELSLTN SEIWYAPNTL
ELLSGNTTTA LATNNSDNPS NESESASQQI NLAILKVAAN NVTAHVTGED NTTSDFTIEQ
FTAYDINLEG QSFPLELKTI IALPQQPVIR TFAAGRIAIS PSTSSLTSSE LEATIEFGAA
QAAQSKNAQL TVTTANTTLN WAQDLDLTTT LAISSPNVRD LLKALNIEID THNPQVLNGL
EINSDITLKQ QQLALDNIKL SLDKTRATGN IKVNLAQNTG LPPTAVNLAI GEINVDDYLP
TPVDVETAPT DSAPTPLPIE LINQLTTQAS VSIESATVKK IAISKIATEI EAHAGNINIK
KLNAKLFDGE INTNAVARTN NDSLAISGET KVKQLDLQKT LIHFADFKNI EGNANSTVQF
STSGTTDKQL TDNLSADTEA TIPKLIFSPF NLEKQYCEAL AWIEEKQGKT NADQNIAAKQ
WQAYTQLEPV KLAANLRGTE VNVSTLSADI EKIQAAAKGT LNFATGAFSF PIDLSLANFS
SAPDSCSNID KKWRELSLPL ICKGKLDSIN AKTCLPDTKR INKIIEAKVN AKVNEAKEKA
KAELDEKLEK EKAKLKEQAD DKIKDALEDL KKDKKAKELE DKLKQLLGNG K
|
|---|
| |