Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1408 |
Symbol | |
ID | 3968698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1825152 |
End bp | 1826105 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920485 |
Product | protein translocase subunit secF |
Protein accession | YP_526882 |
Protein GI | 90021055 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCCAG AAAAAATTCT TAACTTTATG GGGCAGCGTA AATTAGCTGC GGTGTTCTCT ATATTATTGT TGGTTGGCTC CATTGTTTCT TTAACAGTGC AGGGGCTTAA CTTTGGCTTG GATTTCACTG GTGGTACACA GCTGGAATAT AAGTACGAAA CAGCCGCCGA CTTGAACGCA ATTCGAGCAA CTTTAGAAGA GGCCGGTTAT ACCGGTGCTG TAGTGGTGAA CTACGGGTCT GACACGAATG TGTTAATGAG CCTGCAGCAA TCTGTACCTC CCAGTGCAGA TCCGTCTAAG CCACAAGAAA TTGTTTCTAT TGGCGAAGTG GTGCTGGAAT TACTTGAAAG TAAATCTAGC GAAGAAATAG AGCTGCTGCG CACAGATGTT GTGGGTGCAC AGGTAGGCGA AGAGTTGGCA AATAGCGGCG GCATGGGTAT GTTGTTGGCG CTAGCGGTAG TAATGGCGTA CGTTGCGGTG CGCTTCCAAT TTAAATTTTC TGTTGGTGCT GTGGCAGCGT TAATCCACGA TGTGATAATT GTGCTGGGTG TGTTTTCGTT TTTTCAGCTT ACTTTCGATC TTACCGTGCT GGCGGCGGTG CTTGCGGTAA TAGGTTACTC GCTTAACGAT ACCATTGTTG TGGCAGACCG AATTCGCGAA AACTTCCGTT TAATTCGTAA GGGCGATTCA GAGGAGGTGA TTAACATCTC TTTAACGCAA ACCCTTGGCC GCACAATGAT TACCTCGTTA ACCACTTTGC TAGTGTTATT GGCGCTGTTC TTTGTGGGTG GCGAGATGAT CCACAATTTC GCCTTAGCAT TAATTGTGGG TGTTGTGATT GGTACTTATT CGTCTATTTA TGTTTCTGCC AATATTCTAA TGGCGATGCA TATAGACCGC GAAGATTTAA TCCCTGTTGT GAAAGAGGGT GAAGAGCTCG ACGAGCTGCC CTAA
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Protein sequence | MTPEKILNFM GQRKLAAVFS ILLLVGSIVS LTVQGLNFGL DFTGGTQLEY KYETAADLNA IRATLEEAGY TGAVVVNYGS DTNVLMSLQQ SVPPSADPSK PQEIVSIGEV VLELLESKSS EEIELLRTDV VGAQVGEELA NSGGMGMLLA LAVVMAYVAV RFQFKFSVGA VAALIHDVII VLGVFSFFQL TFDLTVLAAV LAVIGYSLND TIVVADRIRE NFRLIRKGDS EEVINISLTQ TLGRTMITSL TTLLVLLALF FVGGEMIHNF ALALIVGVVI GTYSSIYVSA NILMAMHIDR EDLIPVVKEG EELDELP
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