Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1407 |
Symbol | |
ID | 3968697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1823239 |
End bp | 1825107 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920484 |
Product | secretion protein SecD |
Protein accession | YP_526881 |
Protein GI | 90021054 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0970542 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.495357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGCT ACCCGCTTTG GAAATATTTG CTCATCCTAG CTGTCGTGGT TATTGGGTTT CTCTATTCGT TGCCTAATAT TTACGTTCCC GACCCCGCTA TACAAATTTC CGGTATCCGC TCTGGTGTAG AGGTAGATGC TAACGCACTC AATACTGCTA CCAAAGCGCT TGAAGAAAAC GGCATTCAGT ATTTTGGCGC CGAAGCCGGC GAAAAATCTG CACTTATTCG CTTTGCTACG CAAGATGATC AGCTTCGCGC GCGTACCATT GTGCAGCGTG CTTTAAGCCA AGAAAACTAC GTAGTGGCCT TTAACCTAGC GCCAACCACA CCGCAATGGC TGGTTGACTT GGGCGCAGGC CCAATGAGTT TGGGCTTGGA TTTGGCGGGC GGTGTGCATT TCTTGTTAGA GGTGGATACA GAATCTGTAT TAGCTAAAGA AATGGAAGGC TTCGAAGATG ACATTAGCGG CTTAATACGC AAAGAAAAAT TGTACGGTGT AAGTACTCGT TTAACCGATG GTGAGATTGT AATTACTGCC GATTCAGATG ATTTACGTAC AGATGTACTC TTGCTGCTGA AAAAAGAATT AAGTGAATTA GAAACGAAAA GAACAGAAAG GGGCGGCAAG TATATTGTTA CTGCTGTTCC GAGTGACGCT TACATTCGCG AAAAAGAAAA GCACGCAGTG CAGCAAAACT TAACCACGTT GCGTAACCGT GTGAACGAAA TTGGTGTTTC TGAGCCGCTG GTGCAAACGC AAGGTCGCAA CCGTATTGTG GTGCAGTTGC CAGGTATTCA AGATACCGCA CGCGCTAAAA AGATCTTAGG CAAAACCGCT AACCTAGAAT TTCGCTTAGA GGCACCTAAA GATGGTTTAG CTTCGCAAAA AGAGCATTTT GAGTTTCGCG ATGAGATAAA ACAAGCGCGA TATGGTGGTG CTTGGTTAGA AAAGCGCCCG TTTGTAACTG GGCAAAACGT AACTGGCGCA ACCCCAGGGT TTGATGATCA ATCAAACTCG CCCATGGTGA GCATATCGCT AGACAGCAAG GGTGCAGGAT TAATGCACCG TAAAACCCGT AAGCACGTAA ATGAGAGTAT GGCGATTGTA TTAATTGAAT ACGATACCAA AGTACGAGAA GAAGTTAACG AAGCGGGTGA AACTGTAATT GTTACAGAGC AAGTACCCAA CCCTAAAATG GTTAGCTTGG CGAATATTAA CGAAGCGCTG AGCAAGCGAT TCCAAATTAC CGGTTTAGAT TCACCAGAAG AAGCATCGGA ATTGGCGTTG TATATTCGCG CTGGTGCGTT GGCTGCCCCT ATGTCATTCG TAGAAGAGCG CACCATTGGC GCTTCGTTGG GGCAAGAGAA TATCGACCTG GGTGTTAAAT CGGTACAGCT AGGTTTGGTG CTAGTGCTTA TCTTTATGAT GGTGTTCTAC AAAGTGTTTG GCTTTTTTGC CAACTTGGCG CTTGCGGTTA ACTTAATGGT GCTTGTGGCC GTTATGTCTA TGTTTGGCGC TACGCTTACC TTGCCTGGTA TTGCCGGTAT TGTGCTTACT GTAGGTATGG CGGTGGATGC AAACGTGCTT ATTTTCTCGC GAATAAAAGA GGAGCTTAAA GCAGGTTCTT CGTCGCAAAC GGCCATTAAC AGCGGTTACG ATTCTGCATT TTCAACCATT TTGGATGCGA ACTTAACAAC ATTCATTGTT GCCATTATTT TGTACGCCAT TGGTTCTGGG CCGGTTAAAG GTTTCGCGGT TACTTTAGCT ATAGGTATTA TCACTTCCAT GTTTACTGCC ATTGTGGGCA CGCGCGCGCT AGTTAATTTA GCGTTTGGCG GTCGCAATGT TAAAAAACTC TGGATATAA
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Protein sequence | MNRYPLWKYL LILAVVVIGF LYSLPNIYVP DPAIQISGIR SGVEVDANAL NTATKALEEN GIQYFGAEAG EKSALIRFAT QDDQLRARTI VQRALSQENY VVAFNLAPTT PQWLVDLGAG PMSLGLDLAG GVHFLLEVDT ESVLAKEMEG FEDDISGLIR KEKLYGVSTR LTDGEIVITA DSDDLRTDVL LLLKKELSEL ETKRTERGGK YIVTAVPSDA YIREKEKHAV QQNLTTLRNR VNEIGVSEPL VQTQGRNRIV VQLPGIQDTA RAKKILGKTA NLEFRLEAPK DGLASQKEHF EFRDEIKQAR YGGAWLEKRP FVTGQNVTGA TPGFDDQSNS PMVSISLDSK GAGLMHRKTR KHVNESMAIV LIEYDTKVRE EVNEAGETVI VTEQVPNPKM VSLANINEAL SKRFQITGLD SPEEASELAL YIRAGALAAP MSFVEERTIG ASLGQENIDL GVKSVQLGLV LVLIFMMVFY KVFGFFANLA LAVNLMVLVA VMSMFGATLT LPGIAGIVLT VGMAVDANVL IFSRIKEELK AGSSSQTAIN SGYDSAFSTI LDANLTTFIV AIILYAIGSG PVKGFAVTLA IGIITSMFTA IVGTRALVNL AFGGRNVKKL WI
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