Gene Sde_1407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1407 
Symbol 
ID3968697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1823239 
End bp1825107 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content45% 
IMG OID637920484 
Productsecretion protein SecD 
Protein accessionYP_526881 
Protein GI90021054 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0970542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.495357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGCT ACCCGCTTTG GAAATATTTG CTCATCCTAG CTGTCGTGGT TATTGGGTTT 
CTCTATTCGT TGCCTAATAT TTACGTTCCC GACCCCGCTA TACAAATTTC CGGTATCCGC
TCTGGTGTAG AGGTAGATGC TAACGCACTC AATACTGCTA CCAAAGCGCT TGAAGAAAAC
GGCATTCAGT ATTTTGGCGC CGAAGCCGGC GAAAAATCTG CACTTATTCG CTTTGCTACG
CAAGATGATC AGCTTCGCGC GCGTACCATT GTGCAGCGTG CTTTAAGCCA AGAAAACTAC
GTAGTGGCCT TTAACCTAGC GCCAACCACA CCGCAATGGC TGGTTGACTT GGGCGCAGGC
CCAATGAGTT TGGGCTTGGA TTTGGCGGGC GGTGTGCATT TCTTGTTAGA GGTGGATACA
GAATCTGTAT TAGCTAAAGA AATGGAAGGC TTCGAAGATG ACATTAGCGG CTTAATACGC
AAAGAAAAAT TGTACGGTGT AAGTACTCGT TTAACCGATG GTGAGATTGT AATTACTGCC
GATTCAGATG ATTTACGTAC AGATGTACTC TTGCTGCTGA AAAAAGAATT AAGTGAATTA
GAAACGAAAA GAACAGAAAG GGGCGGCAAG TATATTGTTA CTGCTGTTCC GAGTGACGCT
TACATTCGCG AAAAAGAAAA GCACGCAGTG CAGCAAAACT TAACCACGTT GCGTAACCGT
GTGAACGAAA TTGGTGTTTC TGAGCCGCTG GTGCAAACGC AAGGTCGCAA CCGTATTGTG
GTGCAGTTGC CAGGTATTCA AGATACCGCA CGCGCTAAAA AGATCTTAGG CAAAACCGCT
AACCTAGAAT TTCGCTTAGA GGCACCTAAA GATGGTTTAG CTTCGCAAAA AGAGCATTTT
GAGTTTCGCG ATGAGATAAA ACAAGCGCGA TATGGTGGTG CTTGGTTAGA AAAGCGCCCG
TTTGTAACTG GGCAAAACGT AACTGGCGCA ACCCCAGGGT TTGATGATCA ATCAAACTCG
CCCATGGTGA GCATATCGCT AGACAGCAAG GGTGCAGGAT TAATGCACCG TAAAACCCGT
AAGCACGTAA ATGAGAGTAT GGCGATTGTA TTAATTGAAT ACGATACCAA AGTACGAGAA
GAAGTTAACG AAGCGGGTGA AACTGTAATT GTTACAGAGC AAGTACCCAA CCCTAAAATG
GTTAGCTTGG CGAATATTAA CGAAGCGCTG AGCAAGCGAT TCCAAATTAC CGGTTTAGAT
TCACCAGAAG AAGCATCGGA ATTGGCGTTG TATATTCGCG CTGGTGCGTT GGCTGCCCCT
ATGTCATTCG TAGAAGAGCG CACCATTGGC GCTTCGTTGG GGCAAGAGAA TATCGACCTG
GGTGTTAAAT CGGTACAGCT AGGTTTGGTG CTAGTGCTTA TCTTTATGAT GGTGTTCTAC
AAAGTGTTTG GCTTTTTTGC CAACTTGGCG CTTGCGGTTA ACTTAATGGT GCTTGTGGCC
GTTATGTCTA TGTTTGGCGC TACGCTTACC TTGCCTGGTA TTGCCGGTAT TGTGCTTACT
GTAGGTATGG CGGTGGATGC AAACGTGCTT ATTTTCTCGC GAATAAAAGA GGAGCTTAAA
GCAGGTTCTT CGTCGCAAAC GGCCATTAAC AGCGGTTACG ATTCTGCATT TTCAACCATT
TTGGATGCGA ACTTAACAAC ATTCATTGTT GCCATTATTT TGTACGCCAT TGGTTCTGGG
CCGGTTAAAG GTTTCGCGGT TACTTTAGCT ATAGGTATTA TCACTTCCAT GTTTACTGCC
ATTGTGGGCA CGCGCGCGCT AGTTAATTTA GCGTTTGGCG GTCGCAATGT TAAAAAACTC
TGGATATAA
 
Protein sequence
MNRYPLWKYL LILAVVVIGF LYSLPNIYVP DPAIQISGIR SGVEVDANAL NTATKALEEN 
GIQYFGAEAG EKSALIRFAT QDDQLRARTI VQRALSQENY VVAFNLAPTT PQWLVDLGAG
PMSLGLDLAG GVHFLLEVDT ESVLAKEMEG FEDDISGLIR KEKLYGVSTR LTDGEIVITA
DSDDLRTDVL LLLKKELSEL ETKRTERGGK YIVTAVPSDA YIREKEKHAV QQNLTTLRNR
VNEIGVSEPL VQTQGRNRIV VQLPGIQDTA RAKKILGKTA NLEFRLEAPK DGLASQKEHF
EFRDEIKQAR YGGAWLEKRP FVTGQNVTGA TPGFDDQSNS PMVSISLDSK GAGLMHRKTR
KHVNESMAIV LIEYDTKVRE EVNEAGETVI VTEQVPNPKM VSLANINEAL SKRFQITGLD
SPEEASELAL YIRAGALAAP MSFVEERTIG ASLGQENIDL GVKSVQLGLV LVLIFMMVFY
KVFGFFANLA LAVNLMVLVA VMSMFGATLT LPGIAGIVLT VGMAVDANVL IFSRIKEELK
AGSSSQTAIN SGYDSAFSTI LDANLTTFIV AIILYAIGSG PVKGFAVTLA IGIITSMFTA
IVGTRALVNL AFGGRNVKKL WI