| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1397 |
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| Symbol | |
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| ID | 3968666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1809961 |
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| End bp | 1812921 |
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| Gene Length | 2961 bp |
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| Protein Length | 986 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920473 |
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| Product | nucleoside diphosphate kinase |
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| Protein accession | YP_526871 |
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| Protein GI | 90021044 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.03521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000213589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATTACA ATATTTTTAA AAAAACCCAG CTCGCCGCTG CCGTTTCTAT GGTAGTAGGT
GCAGCAACAA TCTCTCCTGT ATACGCTCAA GATAATGCTG CCGATAACAC TTTAGAGGAA
GTTATTGTTA CTGGTATTCG TGGAAGTTTG CAGCGTGCAA TGGATATTAA GCGCGATGCT
CAAGGTGTTG TAGATTCAAT ATCAGCAGAA GATATTGGTA AAATGCCTGA CACCAACTTG
GCAGAATCTT TGCAGCGAAT TACTGGTGTT TCAATCGATC GCTCTAACGG CGAAGGTCAA
AAGATTACCG CCCGCGGTTT AGGTCCAGAT TTTAACCTTG TTACTCTTAA CGGGCGTCAG
ATGCCTACTT CTGGGTTGCA AGGTACAAGC ATTAACTCAT CGCGCTCGTT TGACTTTAGT
AACCTAGCAT CAGAGTCGGT TGCTGGAGTG GATGTGTATA AAACTTCAAG AGCCGATATA
CCTACAGGTG GTATCGGTGC AACCGTAAAT ATTAAAACTG CTCGCCCTTT AGATAATGCG
GGCTTCAAGC TAACGGCAGG CGTAAAAGGT GTATACGATA CTTCGCGCGA AGATGCCTCT
TTAGCGCCAG AAATATCGGC ATTAATTAGC AATACGTTTT TAGATGATAC TGTTGGTGTG
TCTTTGGCTA TCAGTCATCA AGAGCGTGAA GGTGCAAGTG ATGCAGCTAC CGTTGGTAGC
TACCACACGC AAAGTGTTGT GCCTGGTGAC GGTTGGAATG GTGGCTTTGT TGGCGAAGGT
GCGGATGCAT ACCCTTCGAC AGCGCAGTTA TCTCGCCCGC AAAACTTCGA GTACAACTTC
ACCGACTTTG AGCGCACGCG AGATAATGCC CAATTAGTGC TGCAGTTCAG CCCATCTGAA
GATATTACTG CTACATTGGA TTACACCTAC TCTGAGCAAG AAGTGTTGTC TAGCTCGAAT
ATGGTTGGTG CTTGGTTTTG GGAAGGTAAC GGTTTAAATG CAACCAATAA CGAATTCGTT
GAAGGTAGCG CTGGTCAGTA TTACCCAGAG CTTTACTCTT CAACAGCATG TTGCGATTTA
ACTTTCTCGG CAGCGCGTTT TGGTCAAGTC AATGAGAATA ATTCTGTTGG CTTAAATATC
GAATGGGATG CAACAGATAA CTTGTCATTA GAGTTGGATT ATCATAACTC TAAAGCGCAT
TCGGAAGCGG CTAGCCCCTA TGGCAATAGC TCTGTATTGA CAATGGCTAA CCAAAACCGT
GTTGCTACTG TAGTGGATTT CCGTCAAGAC TTTCCTGTTT GGGATGTAGC TTTGGCTGAA
GGCACTACTG ATGCTCCGTC TACCTTCACT GTAACTGGTA GTTCTTTACG CAACAGTCAG
TTCACCAACG ATATTTCTCA GGTTCAATTG AAAGGCTCTT ACACCTTCGA TGAAGGTGTT
GTTAAGAGTG TAGATTTTGG TGTTTCTTCT ACCGAAAATG ATGTTAAAGC TGTAATGATG
ACTGCACAGC GTGATACTTG GGGTGGCGAG GGTACAGTTG ATGACATCCC AGATTCATTG
TTTACTGCGG AGTCTATTAC TGGTCGTATG GATTCGTTAT CTGGTACTGG TACACTAGCT
GACGGTAGTG AGTTTAATAT TTATGATCGT TACTACTCAT TCAGTTTTGA AGAAGCCGCT
GCGGCTGTAG CTGCGTTTGC TGCGCCAACG GACGAATCGG GTACCAGCCC AAATATTTGG
CCTTGTGTTG GTGAATTCTG TGTGACAGAA GATTGGACTA CAGATGAGCG TGTAAGCGAA
TCTATGTTGG CGGGTTACGT GCAAGCTAAC ATGGAATTTG AAGTAGCTGG AATGGAAACG
AAGGTAACCG CCGGTGTTCG CTACGAAGAG ACCGACGTGT CCGCAAGTGC AATGGTACCA
GCATACTCTG GGGTAGATTG GGTTTCTGCT AACGAATTTG CTTTGGTGAG CAGTGGTGAT
AGTGCTTACA CCGACTTTAA AGGTAGTTAT TCTAACTTCT TACCAAATAT AGATGTTAGT
TTGGCTCCGG TAGAAGATGT GATTGTTCGA GCGTCTTTCT CTAAAACAAT TGCGCGTCCA
ACTTATAATC ATATTAAAGG TGGCGTTTCA ATCAACGAAG TTCGCGCTAC TTATGCAACT
GCTAGCAGTG GTGATCCATC ATTGCTACCG CATGAGTCTA AGAACTTCGA CTTGTCTGCT
GAGTGGTACT TTGGTGAAGC AAGTTATGTG TCAGCTGGTG CATTCTATAA AGATGTGGAA
AACTTTATTG GTACGCACAC CGAAACAGAA AACTTCTTTG GTTTGCGTAA TCCAGCAGAT
GGCGCACGTT TTGCTGAAGC ATTAGCATCG GAAGGGGCAG ATAACGTTGC GATTCGTCAA
TACATCTTCG ACAATTTCCC CGAATCCACA ACTGAGTCAA GTGGCCTAAT TCACTCAATC
GATTCAGATA ATTTAATCGA ATTTGATGTA TCCAAGCCGT TTAACGAAAA GAAAGCTAAT
ATTACGGGTA TGGAGTTCGC TGTTCAGCAT ACTCTAGACA ATGGCTTTGG TGCCTTGTTG
AACTTTACTG TGGTAGATAG TGATGCTGAA TACGATGCTA CTGTATTTGA TGAGCAGTTT
GCTTTGCCTG GTTTGAGTAA TACCCGTAAC TTGGTTGCTT TCTATGATAA AGATGGCTTA
CAGGTGCGTG TAGCTTGGAA CTGGCGCGGT GCATTCTTGG TAGCCACAGA CGTCGGTCAT
GGAAACCCGC TACAAAACGA AGAGTATCAA CAGGTTGATA TCAATGCGAG CTATGATATT
AATGATAACT TCACTGTGTT TGCGGAGGGC ATAAACGTTA CAAATGAAAC GCAGCGTTTA
TATGGCCGCT ACAAAACGAC TATGATGCAA GCTGTTGAAG GTGGTCCTCG TTATAACATT
GGTGCTCGTT ACACTTTCTA A
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| Protein sequence | MDYNIFKKTQ LAAAVSMVVG AATISPVYAQ DNAADNTLEE VIVTGIRGSL QRAMDIKRDA
QGVVDSISAE DIGKMPDTNL AESLQRITGV SIDRSNGEGQ KITARGLGPD FNLVTLNGRQ
MPTSGLQGTS INSSRSFDFS NLASESVAGV DVYKTSRADI PTGGIGATVN IKTARPLDNA
GFKLTAGVKG VYDTSREDAS LAPEISALIS NTFLDDTVGV SLAISHQERE GASDAATVGS
YHTQSVVPGD GWNGGFVGEG ADAYPSTAQL SRPQNFEYNF TDFERTRDNA QLVLQFSPSE
DITATLDYTY SEQEVLSSSN MVGAWFWEGN GLNATNNEFV EGSAGQYYPE LYSSTACCDL
TFSAARFGQV NENNSVGLNI EWDATDNLSL ELDYHNSKAH SEAASPYGNS SVLTMANQNR
VATVVDFRQD FPVWDVALAE GTTDAPSTFT VTGSSLRNSQ FTNDISQVQL KGSYTFDEGV
VKSVDFGVSS TENDVKAVMM TAQRDTWGGE GTVDDIPDSL FTAESITGRM DSLSGTGTLA
DGSEFNIYDR YYSFSFEEAA AAVAAFAAPT DESGTSPNIW PCVGEFCVTE DWTTDERVSE
SMLAGYVQAN MEFEVAGMET KVTAGVRYEE TDVSASAMVP AYSGVDWVSA NEFALVSSGD
SAYTDFKGSY SNFLPNIDVS LAPVEDVIVR ASFSKTIARP TYNHIKGGVS INEVRATYAT
ASSGDPSLLP HESKNFDLSA EWYFGEASYV SAGAFYKDVE NFIGTHTETE NFFGLRNPAD
GARFAEALAS EGADNVAIRQ YIFDNFPEST TESSGLIHSI DSDNLIEFDV SKPFNEKKAN
ITGMEFAVQH TLDNGFGALL NFTVVDSDAE YDATVFDEQF ALPGLSNTRN LVAFYDKDGL
QVRVAWNWRG AFLVATDVGH GNPLQNEEYQ QVDINASYDI NDNFTVFAEG INVTNETQRL
YGRYKTTMMQ AVEGGPRYNI GARYTF
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