| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1396 |
|---|
| Symbol | |
|---|
| ID | 3968665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1808683 |
|---|
| End bp | 1809681 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920472 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_526870 |
|---|
| Protein GI | 90021043 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.188133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000600717 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAA TTTACGACGT ATCGGAACTA GCTGGTGTGT CTTTGGCAAC CGTTTCGCGT
GTAATGAACA ACAATGCACG CGTAAGCGAT AAAACCAAGC AAAAGGTAAC TGCAGCCATG
GAGGCGTTGG ACTATCGTCC AAGCGCCATT GCTAAGGGGT TGGCCTCTAA CAAATCTGGT
AGCGTGGGCG TATTAATTTC AGAGCTACAC GGCCCTTTTT ACGGCATGAT GATGAGTGCC
ATAGAGTCAG AGCTGCGCAA TGCCGATGTG CATGCCATTA TTGCTGCGGG CCACAGTGAT
GCTGCCGAAG AAAAAGAAGC TATCGAATTC CTATTAAGCA GAAAGTGCGA TGCGCTAGTG
TTATGGGTGG AGTCGGTATC TGATAAATAC TTGCTTGAGC TTTCTAAGCG CAGCACGCCC
GTATTTATAC TCGGTAGAAA AATTAACGGC CTCGCCAAAA ACTGCATAAC CCTTGATAAC
CACATGGGAG GCTATTTGGC AGCGTCCCAC CTTGCGAAAA TGGGACATAA GAAAGTGGCA
TACATATCTG GGCCGCTGTG GAAAAAAGAA GCGCAAGATA GGTTGGGTGG GTTCGAGGCA
GCACTAAATG AACACAAAAT AAAACTTAAT GAAAACCTTA TTTACGAGGG TGATTATCAA
GAGGCAGGCG GGCAAGCAGG CTTGCAGTAC CTGTTCAAGC AGCGCGCTAA GTTTAGTGCC
GTTTTTTGCG CAAACGACGA GATGGCGGCG GGTGCCATGT CTGCCGCGCG TGATCTGGGA
CTATCGCTTC CGCAAGATTT ATCGATAATG GGGTTCGATA ATGTAAAGTA TGCCGAATAT
GTTTACCCCA AGCTTTCTAC CATCAATTAC CCGGTGGGGC AGATGGCTTC TATGGCTGCA
AAATGGGTTT TAAAAACGGT TTACAATAAT AAAAACATAG AGGTTTTAAA TCACTTCGAG
CCCACGCTGG TTGAACGAGA ATCAGTCGCA AAAGTTTAG
|
|---|
| Protein sequence | MATIYDVSEL AGVSLATVSR VMNNNARVSD KTKQKVTAAM EALDYRPSAI AKGLASNKSG
SVGVLISELH GPFYGMMMSA IESELRNADV HAIIAAGHSD AAEEKEAIEF LLSRKCDALV
LWVESVSDKY LLELSKRSTP VFILGRKING LAKNCITLDN HMGGYLAASH LAKMGHKKVA
YISGPLWKKE AQDRLGGFEA ALNEHKIKLN ENLIYEGDYQ EAGGQAGLQY LFKQRAKFSA
VFCANDEMAA GAMSAARDLG LSLPQDLSIM GFDNVKYAEY VYPKLSTINY PVGQMASMAA
KWVLKTVYNN KNIEVLNHFE PTLVERESVA KV
|
|---|
| |