| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1381 |
|---|
| Symbol | |
|---|
| ID | 3965861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1785704 |
|---|
| End bp | 1787533 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637920457 |
|---|
| Product | phosphogluconate dehydratase |
|---|
| Protein accession | YP_526855 |
|---|
| Protein GI | 90021028 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR01196] 6-phosphogluconate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCG TAATCGAAGC TGTAACTCAG CGAATTATTG AGCGCAGTCG ACATTCTCGT
CAGGCGTATT TGAATTTAAT GCGCAACACC ATGGAGCAGC ATCCTCCTAA AAAGCGTCTA
TCTTGCGGCA ATTTGGCTCA TGCCTATGCA GCATGTGGTC AATCCGATAA GCAAACAATT
CGTTTAATGC AAAGTGCAAA CATAAGTATT ACTACGGCAT TTAACGATAT GCTTTCGGCG
CATCAGCCTT TAGAAACATA CCCTCAAATA ATCAAAGAAA CTGCGCGTGC AATGGGTTCA
ACTGCTCAAG TTGCAGGCGG CGTGCCGGCA ATGTGTGATG GTGTAACTCA AGGCCAGCCC
GGTATGGAGC TGAGTTTGTT TAGCCGCGAA GTTGTAGCAA TGGCTACAGC AGTAGGCCTT
TCGCACAATA TGTTTGATGG CAATATGTTT TTGGGTGTAT GCGATAAAAT TGTTCCTGGC
ATGCTAATTG GCGCGTTGCA GTTTGGTCAT ATTCCTGGGG TGTTTGTGCC TGCCGGACCA
ATGCCTTCTG GTATTCCCAA CAAAGAAAAA GCAAAAGTTC GTCAGCAATA TGCGGCGGGC
ATTGTGGGGG AAGATAAGCT TTTAGAAACC GAGTCGGCTT CCTATCACAG TGCAGGCACG
TGTACTTTTT ACGGTACAGC GAATACAAAC CAAATGATGG TTGAAATGTT GGGTGTTCAG
TTGCCTGGCT CGTCGTTTGT TTACCCCGGT ACTGAGTTGC GTGATGCCTT AACGAGAGCT
GCTGTTGAAA AGTTGGTAAA AATCACAGAT TCAGCCGGTA ACTACCGTCC GCTCTACGAA
GTCATTACGG AAAAATCCAT CGTCAATTCA ATAATTGGTT TGTTGGCTAC CGGCGGTTCT
ACTAACCACA CGCTACACAT TGTTGCTGTG GCTCGCGCTG CGGGTATAGA GGTTACGTGG
GCAGATATGG ACGAGCTTTC GCGTGCTGTG CCATTACTTG CACGTGTTTA CCCTAACGGC
GAAGCTGATG TTAACCAATT CCAGCAGGCT GGCGGCATGG CTTATTTAGT AAGAGAGCTG
CGCAGCGGCG GTTTGCTAAA TGAAGATGTG GTTACTATTA TGGGTGAGGG CCTCGAGGCC
TACGAAAAAG AGCCCATGCT TAACGATAAG GGGCAGGCTG AATGGGTAAA TGATGTACCT
GTTAGCCGCG ACGATACCGT TGTGCGTCCA GTTACCTCGC CTTTCGATAA AGAGGGTGGG
TTGCGTCTAC TCAAGGGTAA CTTAGGGCAG GGCGTAATCA AAATTTCTGC GGTAGCGCCA
GAAAATCGCG TTGTTGAGGC CCCATGTATT GTATTCGAGG CCCAAGAAGA GCTAATAGCT
GCGTTTAAGC GTGGTGAGCT CGAAAAAGAC TTTGTTGCGG TAGTGCGCTT CCAAGGGCCT
TCTGCCAATG GCATGCCAGA ACTTCATAAA ATGACCCCGC CTTTAGGTGT GCTTCAAGAT
AAGGGTTTCA AGGTAGCGTT AGTTACCGAT GGCAGAATGT CTGGTGCATC TGGTAAAGTG
CCGGCCGGTA TACACTTGTC GCCAGAAGCG AGTAAGGGTG GCCTGTTGAA TAAGCTGCGC
ACGGGTGATG TGATTCGCTT CGATGCCGAA GCGGGCGTTA TTCAAGCGCT TGTTAGTGAT
GAAGAGTTAG CTGCGCGTGA GCCAGCTGTG CAACCGGTCG TGGAGCAGAA CCTCGGACGC
TCTCTGTTTG GTGGTTTGCG CGATTTGGCT GGTGTATCGC TACAAGGCGG AACAGTTTTC
GATTTTGAAA GAGAGTTTGG CGAAAAATAG
|
|---|
| Protein sequence | MNSVIEAVTQ RIIERSRHSR QAYLNLMRNT MEQHPPKKRL SCGNLAHAYA ACGQSDKQTI
RLMQSANISI TTAFNDMLSA HQPLETYPQI IKETARAMGS TAQVAGGVPA MCDGVTQGQP
GMELSLFSRE VVAMATAVGL SHNMFDGNMF LGVCDKIVPG MLIGALQFGH IPGVFVPAGP
MPSGIPNKEK AKVRQQYAAG IVGEDKLLET ESASYHSAGT CTFYGTANTN QMMVEMLGVQ
LPGSSFVYPG TELRDALTRA AVEKLVKITD SAGNYRPLYE VITEKSIVNS IIGLLATGGS
TNHTLHIVAV ARAAGIEVTW ADMDELSRAV PLLARVYPNG EADVNQFQQA GGMAYLVREL
RSGGLLNEDV VTIMGEGLEA YEKEPMLNDK GQAEWVNDVP VSRDDTVVRP VTSPFDKEGG
LRLLKGNLGQ GVIKISAVAP ENRVVEAPCI VFEAQEELIA AFKRGELEKD FVAVVRFQGP
SANGMPELHK MTPPLGVLQD KGFKVALVTD GRMSGASGKV PAGIHLSPEA SKGGLLNKLR
TGDVIRFDAE AGVIQALVSD EELAAREPAV QPVVEQNLGR SLFGGLRDLA GVSLQGGTVF
DFEREFGEK
|
|---|
| |