| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1362 |
|---|
| Symbol | |
|---|
| ID | 3965311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1762431 |
|---|
| End bp | 1763624 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920438 |
|---|
| Product | Sodium:galactoside symporter |
|---|
| Protein accession | YP_526836 |
|---|
| Protein GI | 90021009 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACAC CAATAGACAG CTACTTAAAA ATACTGGCTC AAAAAGACGG ATCGGACCTT
TACTTAAGTA CCGGCGCCCC GCCCTGCGCC AAGTTTCAAG GCACGCTTAA GCCGCTAACC
CAACAACCGT TTAAAGGCGG CGAAATCGAA GCCATAGCCA ATGCAATTAT GGATGCCGAA
CAACGCGAGC AGTTTAGCCA TGAGCTTGAA ATGAACCTTG CGGTATCAAT ACCTGGCGTT
GGGCGCTTTC GTATTAATAT TTTTAAACAG CGCAATGAAG TGTCAATTGT TGCGCGCAAT
ATTAATACCG ACATTCCCCA ATTCGACAAC CTTGGGCTGC CAGAAATATT AAAAGACGTC
ATTATGAATA AGCGCGGGCT AGTGCTGTTT GTGGGTGGCA CAGGTTCGGG TAAATCGACT
TCACTCGCGG CGCTTATCGA CCACCGCAAT GCCAACCACG GCGGCCATAT TATTACAATT
GAAGACCCAG TAGAGTATGT ACATAAACAC AAAAAAAGTG TGATTAACCA GCGCGAGGTG
GGTGTTGATA CGCGCAGCTT TCGCAACGCT TTAAAAAATA CGCTTAGGCA AGCACCCGAC
GTTATCCTAA TTGGCGAAAT TCGCGACCGC GAAACTATGG AGCACGCACT GGAGTTTGCC
GAAACCGGCC ACTTGGCCAT ATCCACTTTA CACGCAAATA ACGCCAACCA AGCGCTAGAG
CGTATTATCA ACCTGTTCCC AGAGGAGCGT AGGCCACAGC TTATTTTGGG GCTTTCGCAA
AACATTCGCG CCATTGTCTC GCAACGGCTA ATCCCTACGG TTGATGGCAA GCGCTGTGCA
GCAATTGAGG TTTTGTTGGG AACAAAAACA ATTCAAGAAT TAATACTAAA AAATAGGTTT
GAAGAAATTA AAGAGATAAT GGAGAAATCT GAAAACCTTG GCATGCAAAC CTTTGATGCG
GCGTTATTTA AACTGCACGC AGCGGGCAAA ATTACGCATG AAGAAGCCAT GAGCAATGCA
GATTCGCCCA ACAATTTACG CTTAAGAATA AAACTCTCAC AAGGCGACGC TGCGCCAACA
GAGAAGGAAG TAAAAGAAGT GGTAGAAAAA GCTGCGCCAA CAAGTTTTGG CGAACTAAGT
TTAGAGGAAA TAGAAGAGCC TGAAGAAGAC GACCCAAACC AATTAAAATT CTAA
|
|---|
| Protein sequence | MGTPIDSYLK ILAQKDGSDL YLSTGAPPCA KFQGTLKPLT QQPFKGGEIE AIANAIMDAE
QREQFSHELE MNLAVSIPGV GRFRINIFKQ RNEVSIVARN INTDIPQFDN LGLPEILKDV
IMNKRGLVLF VGGTGSGKST SLAALIDHRN ANHGGHIITI EDPVEYVHKH KKSVINQREV
GVDTRSFRNA LKNTLRQAPD VILIGEIRDR ETMEHALEFA ETGHLAISTL HANNANQALE
RIINLFPEER RPQLILGLSQ NIRAIVSQRL IPTVDGKRCA AIEVLLGTKT IQELILKNRF
EEIKEIMEKS ENLGMQTFDA ALFKLHAAGK ITHEEAMSNA DSPNNLRLRI KLSQGDAAPT
EKEVKEVVEK AAPTSFGELS LEEIEEPEED DPNQLKF
|
|---|
| |