| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1358 |
|---|
| Symbol | |
|---|
| ID | 3965307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1755319 |
|---|
| End bp | 1756722 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920434 |
|---|
| Product | helix-turn-helix, AraC type |
|---|
| Protein accession | YP_526832 |
|---|
| Protein GI | 90021005 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | [TIGR00785] anion transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTTA CACAGGAAAA CACGTTTAAA ACGGCAATTA TTCTCACTGC CCCGCTACTA
AGCCTGATGC TAGGGCTACT GCTTGCCAGT GGAGGCGTTG CACCTGCTGC AGCTATTACC
GCAAGCATTA CCCTGTTGTG TGCCATTTGG TGGACGACAG AGGCTATCCC CATACCCGTT
ACATCTTTGC TACCGCTTGC GCTTTTTCCC ATGCTGGATG TGCTCAGCCC AAACGAGGTG
GCCAGCGCCT ACGGCAGCCC ACTTATTTTA TTACTTTTGG GTGGTTTTTT ATTATCTACC
GCCATGGAGC ATTCCAACGC CCATAAAAAT ATTGCGTTAA CCATGGTAAA TGCATTTGGA
GGCAGCAGCG AGAAACATGT TGTATTCGGC TTTATGGCCG CTGCAGCAGT GTTAAGTATG
TGGATATCGA ACACTGCCAC CACGTTAATG TTATTACCTA TTGCTGTCGC GCTTATCGAC
TCTAGCCGCA GTAGAACCCT GTGTATTCCT TTGCTATTAG GTATTTGCTA CGCAGCTAGC
GTAGGGGGAA TAGGCACACC AATAGGTACG CCACCAAACC TAATAATGAT GAAAGTTTTT
AACGACACTA CAGGTACGGA AATTACCTTT GTTACCTGGA TGAAATGGGG CGTACCGCTT
GTGGTACTTT TTGTGCCCAT TATTGCTTTG TGGCTTACGC GCAATATAAA AGCCACAACG
GCTATTAGCT TGCCAGAGCC AAACACATGG AGCACAGCAC AAAAGCGTGT ATTAATAGTT
TTTGCTTGTA CAGCGCTATT ATGGGTAACG CGCAAAGCCC CCTATGGTGG CTGGTCAGAG
TTATTTGATC TGCAATATGC AAACGATGCG GCTGTTGCGT TGCTTGCTGT CGTTACGCTG
TTTATTATTC CTAATGGCGA GTCTGGCTCC AAAAGAAGTG CGCTGCTCAC ATGGGAGAGC
GCAAACAAAA TACCTTGGGG AATATTGTTG CTTTTTTCTG GGGGCATTTG CATCGCTCGC
GCATTTAACG CATCGGGCTT GGCGGATATC ATTGCAGAAG GACTTGGCGG GCTAAGCGTA
TTGGCGCCCT TAATTATGCT CTTACTTATC TGCTTAGGCG TTACGTTCTT AACTGAAGTT
ACCAGCAATA CCGCTACCAC CAGTTTGTTG ATGCCCATAC TGGCCGTGGC AAGCGCAAGT
ACCGGTATAG ACCCGCTGGT GCTGATGGTG CCAGCCGCAA TGAGTGCTAG CTGCGCGTTT
ATGCTACCCG TTGCCACCGC GCCTAATGCC GTTATTTTCT CTACGGGGCG TGTCCCCATT
CAAACTATGA TGCGAACAGG GTTTGCACTA AATATATTCG GAAGTGTGCT TATTACCTTT
ATTTGCTATG TCTATTTTTT GTAA
|
|---|
| Protein sequence | MPVTQENTFK TAIILTAPLL SLMLGLLLAS GGVAPAAAIT ASITLLCAIW WTTEAIPIPV
TSLLPLALFP MLDVLSPNEV ASAYGSPLIL LLLGGFLLST AMEHSNAHKN IALTMVNAFG
GSSEKHVVFG FMAAAAVLSM WISNTATTLM LLPIAVALID SSRSRTLCIP LLLGICYAAS
VGGIGTPIGT PPNLIMMKVF NDTTGTEITF VTWMKWGVPL VVLFVPIIAL WLTRNIKATT
AISLPEPNTW STAQKRVLIV FACTALLWVT RKAPYGGWSE LFDLQYANDA AVALLAVVTL
FIIPNGESGS KRSALLTWES ANKIPWGILL LFSGGICIAR AFNASGLADI IAEGLGGLSV
LAPLIMLLLI CLGVTFLTEV TSNTATTSLL MPILAVASAS TGIDPLVLMV PAAMSASCAF
MLPVATAPNA VIFSTGRVPI QTMMRTGFAL NIFGSVLITF ICYVYFL
|
|---|
| |