| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1345 |
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| Symbol | |
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| ID | 3965294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1740751 |
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| End bp | 1742442 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920421 |
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| Product | ATPases involved in pili biogenesis, PilB-like |
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| Protein accession | YP_526819 |
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| Protein GI | 90020992 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.931675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTAAAG AAAAAAAGCG TTTGGGTGAT ATGTTGGTTG ATCAGGGAGT TGTTAGCCCA
GATCAAGTCG TTATCGCAAT TACAGAACAG AGAAAAACTA AAAAGCCATT GGGTCAAGTG
TTTATCGATC TCGGTTTTGT AACCGAACAC GTTATTCGCG ACACCTTAGC TGAAACGTTT
GGTCAGGAAA GTATAGACCT TTCTTCGGCT GTGCCAGATT CTGAAGCGCT TGCGATGGTG
CCTAAAAATG TGGCTACACG AAATAATGTA GTACCTATAA GCTTTAACCA GCGTTCATCC
GAATTGCGAT TAGCGATGGC TGATGTTTAC GATGTAATGG TGTTAGACCG TATTCGTTCT
ATATTGCCGT TAGATGTAGA CATTGTTCCG TTACTTGCCA CCGAAACCGA AATACGCTCA
GCGCTTGATT TATTTTACGG CTATGAATTA TCAGTTGATG GTATTTTAAA AGAAATAGAA
ACCGGTGAGG TGGATTGGCA TAGCTTGGAA GCTGTTGGCC AAGAGTATAG TCAGCCGTTA
GTGCGCTTAG TAGATGCCGT ACTTTCTGAC GCGGTAAAGC GCGATGTGTC GGATATTCAC
TTCGAACCAG AAAGAGGTTT TTTGAGGTTA CGCTATCGCA TTGACGGTGT GTTAAGGCAG
GTTCGTAGCC TGCATAAAGA TTATTGGTCT GCTATTGCTG TGCGCTTAAA GGTAATGGCA
AATTTGAATA TAGCAGAAAC GCGCACTCCG CAAGATGGAC GTATAAGTTT AAATGTGGGC
GGAAAAGACG TGGATTTTCG CGTGTCAGTA CAACCGGTAA CACACGGTGA AAATATCGTG
TTACGTGTGT TGGACCGAAC TAAAGGTATT GTTCCTCTAG AAAAACTCGA TCTTAACCCA
GAAAATTTTG ATCTTATAAA ATTAATGATG AGTAGGCCCG AGGGAATTAT TTTGGTAACT
GGGCCAACAG GTAGTGGTAA AACCACTACG CTCTATTCAA TGCTTAACCA TCGAAATTCG
GTGGAAGTAA ACATTATGAC GTTGGAAGAC CCGGTGGAAT ACCCCATGGA TATGATTCGC
CAAACGTCAA TAAGCGATGC AGCCAAAATG GATTTTGCAA GCGGTATACG TTCTTTAATG
CGGCAAGACC CTGATATTAT TTTAGTTGGC GAAGTACGTG ATGAAGCTAC CGCAGAAATG
GCATTTCGCG CTGCGATGAC AGGCCATCAA GTGTATACCA CTTTGCACAC AAATTCTGCG
CTGGGTTCTA TTCCACGGTT AATGGATATA GGCGTAAAAA CAGATTTATT GGCCGGCAAT
ATAATTGGCA TTATTGGCCA GCGATTAATT CGAAGGCTTT GCGTCAATTG CAAAAAGCCT
CGCCCAGCAG AGGAGTTTGA AAGAATTATT ATAGGTGTTG ACGAGCCCAT TATTTTACAA
GATGCAGTAG GGTGTGAAGC TTGTAATAAC ACCGGCTATA AAGGGCGAAT ATCTGTAATG
GAAGTATTAA AAATAGATAA AGTGTTAGAT GAAATGATCG CCAAACATCT TCCCTTAAGC
GAAATAGAAA ACGCCGCGTT AGAACTCGGC TTTAAAACTA TGGCGGATGA CGGTTTACGC
AGAGTAGTGC TTGGGGAAAC CACTATCGAG GCACTCAGTC GTTCTGTTGA TTTAACAGAA
CGGCTAAGAT AG
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| Protein sequence | MAKEKKRLGD MLVDQGVVSP DQVVIAITEQ RKTKKPLGQV FIDLGFVTEH VIRDTLAETF
GQESIDLSSA VPDSEALAMV PKNVATRNNV VPISFNQRSS ELRLAMADVY DVMVLDRIRS
ILPLDVDIVP LLATETEIRS ALDLFYGYEL SVDGILKEIE TGEVDWHSLE AVGQEYSQPL
VRLVDAVLSD AVKRDVSDIH FEPERGFLRL RYRIDGVLRQ VRSLHKDYWS AIAVRLKVMA
NLNIAETRTP QDGRISLNVG GKDVDFRVSV QPVTHGENIV LRVLDRTKGI VPLEKLDLNP
ENFDLIKLMM SRPEGIILVT GPTGSGKTTT LYSMLNHRNS VEVNIMTLED PVEYPMDMIR
QTSISDAAKM DFASGIRSLM RQDPDIILVG EVRDEATAEM AFRAAMTGHQ VYTTLHTNSA
LGSIPRLMDI GVKTDLLAGN IIGIIGQRLI RRLCVNCKKP RPAEEFERII IGVDEPIILQ
DAVGCEACNN TGYKGRISVM EVLKIDKVLD EMIAKHLPLS EIENAALELG FKTMADDGLR
RVVLGETTIE ALSRSVDLTE RLR
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