| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1343 |
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| Symbol | |
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| ID | 3965292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1737171 |
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| End bp | 1738811 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920419 |
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| Product | Type II secretory pathway component PulD-like |
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| Protein accession | YP_526817 |
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| Protein GI | 90020990 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.255385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATGA GTATGTGGTG TGAGGGGGTA ATTACACGTA TAAAACACTG TGCGCACCAT
GTTTTTAAGT TCGCTGCTAA AGGTAAGCTT GTTGCTGTTT TGGCGGCGCT AACTTGGCTG
AGTGGTTGTT TTTCTGGAAA CGCTAAGCCC AATAGTGGCG GGCATCTCTC GGCAGCGGAC
TTACATAAAA CACAAAGCAT ACCCGAGGTG GTAAAGGTAT TACCGCCTTC GTTACCTGAA
CCATCAAAAA TAAAAAACGA ACGCTTACAT ACAGTTGTAG TTCACGACGT GCCCGTTACG
GAACTTCTGT TTTCATTGGC GAGAGATGCA AATATTAATT TAGATATTGA TTCGGATATA
ACTACCCGAA TTACTCTTAA TGCCGTAAAT CAACCTCTTA TGGCAATTAT CGATCGTGTG
GCAGAAAAAG CCCAGCTTCG CTACGAGAGT ACAAATCACG GCATTTATAT ACGCAAAGAT
AAACCCTTTC TAAAAAGCTA CCGAATCGAT TATTTGAATA TGGAGCGTGA AAGTTCCAGT
AAAGTAAGTG TATCAACCCA AATAAGCTCT ACGGGGCAAG GAGCCGTGTC AGATGGCGGG
GGAGGTGGTG GAGATAACAG CTCAGACACT TCCGTTGTAA ATAAATCGTC GCACTTGTTC
TGGCAAACGT TAGCGAAAAA CGTCGGCTCC ATTTTGGGCT CGCAGCAGGC CGAGCAGCAA
GGCGCATCTC ACCCAGATAT TTTGCTAAAT AAGGAAGGGG GAGTGATGGC TGTGCGAGCT
ACTTACCGCC AGCACAAGGA GATTCAACAT TTTCTAAGCG AGATTATGTT TGCCTCGCAG
CGCCAAGTGC TAATAGAAGC GACTATTGTC GAAGTGACGT TAAGCGAAAG GTATCAAGCA
GGTATTGACT GGAGCGTACT GCAACAAAAT GTAGCCGATG GTGTAACACG AACAGCCACG
CAAGATGTTT TGGATGTAAC GTTGCAAGAC CCTGTTTTTA CTATTACGCA TGTGGGTAAA
AACCTGTCTG CCACAGTTAA AGCGTTAGAT ACATTTGGCG ATGTAAGTGT AATGTCTAGC
CCTAAGGTGA TGACACTAAA CAACCAAACT GCCCTGCTAA AAGTTGTAGA TAATCTTGTT
TACTTTACGG TAGATGTAAA CATAGAAACA AATGAATCTG GCCCCTCCAC CACAACGTTT
GAAACAGAGG TTAACACTGT ACCCATTGGT TTTGTTATGA GTGTTACCCC TTTTATTAAC
GAGTTTGGTT ATGTCACGTT AAATATTCGC CCGACAATTT CTAGGGTAAT TGGTTTGAAA
CGCGACCCCA ACCCTGCATT GGCACAGGTG AATGTGGTAA ATGAAATACC CGAAATACAA
GTTCGAGAGG TGGAATCGGT ACTAAAAATT CCGGATGGTG AGGTGGCTAT TATTGGCGGC
TTGATGCAAG ACGAGCAAGA TAATACCGAA CATGGTGTGC CAGGCCTGTC AAAAATACCT
CTGGTGGGCG GTCTATTTAA ATATACCGAT GACAAAGTGA AAAAAAGTGA GCTGGTTATT
TTTATAAAGC CTATTGTGGT GGACTACTCG AAGAGTTCTC GGGTAGCGTC TGAAAAATTC
CCCGCAGACG ATTGGTACTA A
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| Protein sequence | MIMSMWCEGV ITRIKHCAHH VFKFAAKGKL VAVLAALTWL SGCFSGNAKP NSGGHLSAAD
LHKTQSIPEV VKVLPPSLPE PSKIKNERLH TVVVHDVPVT ELLFSLARDA NINLDIDSDI
TTRITLNAVN QPLMAIIDRV AEKAQLRYES TNHGIYIRKD KPFLKSYRID YLNMERESSS
KVSVSTQISS TGQGAVSDGG GGGGDNSSDT SVVNKSSHLF WQTLAKNVGS ILGSQQAEQQ
GASHPDILLN KEGGVMAVRA TYRQHKEIQH FLSEIMFASQ RQVLIEATIV EVTLSERYQA
GIDWSVLQQN VADGVTRTAT QDVLDVTLQD PVFTITHVGK NLSATVKALD TFGDVSVMSS
PKVMTLNNQT ALLKVVDNLV YFTVDVNIET NESGPSTTTF ETEVNTVPIG FVMSVTPFIN
EFGYVTLNIR PTISRVIGLK RDPNPALAQV NVVNEIPEIQ VREVESVLKI PDGEVAIIGG
LMQDEQDNTE HGVPGLSKIP LVGGLFKYTD DKVKKSELVI FIKPIVVDYS KSSRVASEKF
PADDWY
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