Gene Sde_1330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1330 
Symbol 
ID3965944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1724437 
End bp1725159 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content45% 
IMG OID637920406 
Product3-oxoacyl-[acyl-carrier-protein] reductase 
Protein accessionYP_526804 
Protein GI90020977 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01829] acetoacetyl-CoA reductase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAGAT TAGCACTAGT GACTGGCGGT ACTCGGGGAA TTGGTGAAGC GATTTCAGTT 
CGTTTAAAAG AAGCAGGTTA TCGCGTTGTT GCTAGCTATG CAGGCAACGA TGAGAGCGCC
AATAAATTCA AAGAAAAACA TGACATCCCC GTGATTAAAT TTGACGTATC TAGTTTTGAC
GCGTGTACAG AAGCCGTTAA AAAAATCACT AGTGATATGG GGCCAATAGA AATTCTTGTT
AACAATGCGG GCATTACTCG CGACAGCACT ATTCATAAAA TGAGTGCCGA GCAGTGGCAC
CAAGTGCTGG ATACCAACCT TGGCTCTTGC TTTAACATGT GCCGCAACGT GATTGAAGCG
ATGCGTGAAA ACAAGTTTGG TCGTATTGTT AATATTGGGT CTATAAACGG CCAGGCAGGC
CAATATGGTC AAGTTAACTA CGCCGCTGCC AAATCTGGTA TTCACGGCTT TACTAAAGCA
TTGGCACAAG AAGGGGCAAA CCAGGGCATT ACCGTAAACG CTATTGCGCC AGGCTACATT
GCTACAGATA TGGTACGCGC AGTACCAGAA AAGGTGCTTG AAAAGATTAT TGCCAAAATC
CCTGTTGGGC GATTGGGTGA GGCAGAAGAA ATTGCCCGTG GCGTAGAGTT TTTAGTATCT
GATAACGCGG GCTTTATTAC TGGCTCTACC CTGTCAATTA ACGGTGGCCA ACACATGTAT
TAA
 
Protein sequence
MSRLALVTGG TRGIGEAISV RLKEAGYRVV ASYAGNDESA NKFKEKHDIP VIKFDVSSFD 
ACTEAVKKIT SDMGPIEILV NNAGITRDST IHKMSAEQWH QVLDTNLGSC FNMCRNVIEA
MRENKFGRIV NIGSINGQAG QYGQVNYAAA KSGIHGFTKA LAQEGANQGI TVNAIAPGYI
ATDMVRAVPE KVLEKIIAKI PVGRLGEAEE IARGVEFLVS DNAGFITGST LSINGGQHMY