| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1299 |
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| Symbol | alaS |
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| ID | 3965320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1687182 |
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| End bp | 1689809 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920373 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_526773 |
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| Protein GI | 90020946 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.745017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0109857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCG CAGAAATCCG CGAAGCTTTT TTACAATATT TCGAAAGTAA AGGGCATTCG
CGTGTAGCAA GTAGCTCATT GGTACCTGGG AATGACCCCA CCTTGTTATT TACAAATGCT
GGCATGGTGC AATTTAAAGA TGTGTTTCTA GGCCAAGACA ATCGCAGTTA TAGCCGCGCT
ACAAGTTCGC AACGATGCGT TCGTGCCGGT GGTAAACACA ACGACCTAGA AAACGTAGGC
TACACTGCGC GTCACCATAC ATTCTTTGAA ATGCTGGGGA ATTTTAGCTT TGGTGATTAC
TTCAAAAAAG ACGCAATTAA TTACGCGTGG GAGTTTTTAA CGTCTAAAGA ATGGTTGGCG
ATTCCAACAG AAAAACTATG TGTAACGGTG TATGCCGATG ATGATGAAGC ATACGGCATA
TGGGCCAATG ATGTTGGTGT GCCCGAAGAT CGTATTATCC GTATAGGTGA TAACAAAGGC
GGCCGCTACA ATTCAGATAA CTTTTGGGCA ATGGGAGATA CAGGCCCTTG TGGCCCATGT
ACCGAAATTT TCTACGACCA TGGCGAACAT ATTTGGGGTG GACGCCCTGG TACACCAGAA
GAAGATGGTG ACCGCTTTAT TGAGATTTGG AACGTCGTAT TCATGCAGTT TAACCGCAGT
GTCGATGGTG AAATGGCGCC GTTACCTAAG CCCTCTGTGG ATACGGGCAT GGGCTTAGAG
CGTATTGCGG CAGTTATGCA GCATGTTCAC AGCAATTATG AAATCGACTT GTTTCAAGCG
TTATTAGAGG CTGCTGCGCA AGCAACGCAA GCCGAAGATA AGGATGCTAA ATCCCTGCGA
GTAATTGCGG ATCATATTCG CTCCTGTGCG TTTCTTGTTA GCGATGGCGT GTTGCCCTCT
AACGAAGGGC GAGGTTATGT GTTACGCCGC ATAATCCGCC GCGCTGTGCG TCACGGCAAT
AAGCTCGGTC AAACTAAGCC GTTTTTCCAC ACATTGGTAG CCGCGTTAGT TGAACAAATG
GGCGAGGCTT ACCCAGAGCT TGTGAGAGAT CAAGCCAGTA TTGAAAAGGT GCTGGCTGCA
GAGGAAGATC AATTTGCTAA AACTCTCGAG AAAGGGATGG TGGTACTCGA GAGCGCCTTG
TCAGAATTAA AAGGCACTAT AATTCCCGGC GAAGTTATTT TCACTTTGTA CGATACCTAC
GGTTTCCCTG TAGATCTTAC CAACGACATT GCTCGCGAGC GAGAGCTAAC GCTAGATATG
GACGGTTATG ACGCGCTTAT GGAGCAGCAG AAAAAGCGTG CGCGTGAATC AGGCAGTTTT
AAAGTGGACT ACAGCGCGAC AGCCACTATT GAAGGCCATA CTAACTTTGT GGGTTACAGT
GAGCTAACCG GCGACGCGAG CGTTACAGCA ATTTTGGTTG ATGGGGAAAA TGTAGACACC
CTCACTGAAG GACAAAGCGG TGTAATTGTT TTAGATACCA CTCCATTTTA CGGCGAGTCT
GGTGGTCAAG CTGGAGACAC CGGTTATATT GTTTTTGATG GCGCTAAATT TGAAGTGCAG
GATTGCCAAA AGTCGGGCGC TAACCATTTA CATGTTGGGC AATTGCTAGC AGGCGCGGTG
AAGGTGGGCG ATAAAGCTCA GCCTGTCGTA GATTCTGCTG TAAGGCAAGC CACGGCACTT
AACCACTCTG CCACTCATCT ATTGCACGCT GCGCTTCGTA AAGTATTGGG CGAACATGTT
ACGCAAAAAG GCTCGCTAGT GGATTCTGAG CGTTTGCGTT TCGATTTTTC TCATTTTGAG
GCTGTAAAGC CTGAAGAGCT TAAGCAAATA GAAAGCATGG TCAACGAGCA AATTCGCTTG
AATAGCCCTG TAGAAACTGA ATTGTGTGAT ATGGAAGCCG CTCAGCAAAA AGGCGCTATG
GCGCTATTTG GTGAGAAGTA TGGCGATGAA GTGCGTGTAC TAAGCATGGG CGGAGCGTTC
TCTGTCGAGC TGTGTGGTGG TACTCATGTA TCGCGCACAG GTGATATTGG GTTAATTCGA
ATTACCTCTG AGTCTGGTAT TGCATCTGGT GTTCGCCGTA TAGAGGCGGT GACGGGTGAA
AAAGCGTTAA GCGTTATCGA TGCTTCTGCA GACACTTTGA ATGCAGCGGC TAAACTGTTA
AAAGCCTCGC CAGAAAACTT ACTAGATAAA GTTGAGCAGT TGATTGCGCA GAATCGTCAG
TTGGAGAAAT CCTTGGCGGC GGCGAAGAGC AAGCTGGCAT CTTCCTCTGC GGATGAATGG
CTAAGCGAAG CTACTGATAT AGCAGGTGTT AAAGTATTGG CTAAAGCGGT AGAGGGAGTT
GATGCTAAGT CCTTACGAGA TATGATGGAT AAGCTCAAAA ACAAGCTAGG TACTTCTGCT
GTTATCTTGG CTTCTGTCAA CGACGACAAA ATTAGTTTGG TTGCCGGAGT GTCTCAAGAT
GCAACCTCAA AAATCAAAGC GGGCGATATG GTTAAGCATG TGGCTGGTTT AATTGGAGGC
AAAGGGGGGG GGCGCCCAGA TATGGCTCAA GGTGGTGGCA CCGATGTGGA AGCCTTGCCT
GCGGCTATTG GTTCGGTGTT AGATTGGGCT AAGGGCGTTA TTGGCTAA
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| Protein sequence | MKSAEIREAF LQYFESKGHS RVASSSLVPG NDPTLLFTNA GMVQFKDVFL GQDNRSYSRA
TSSQRCVRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKKDAINYAW EFLTSKEWLA
IPTEKLCVTV YADDDEAYGI WANDVGVPED RIIRIGDNKG GRYNSDNFWA MGDTGPCGPC
TEIFYDHGEH IWGGRPGTPE EDGDRFIEIW NVVFMQFNRS VDGEMAPLPK PSVDTGMGLE
RIAAVMQHVH SNYEIDLFQA LLEAAAQATQ AEDKDAKSLR VIADHIRSCA FLVSDGVLPS
NEGRGYVLRR IIRRAVRHGN KLGQTKPFFH TLVAALVEQM GEAYPELVRD QASIEKVLAA
EEDQFAKTLE KGMVVLESAL SELKGTIIPG EVIFTLYDTY GFPVDLTNDI ARERELTLDM
DGYDALMEQQ KKRARESGSF KVDYSATATI EGHTNFVGYS ELTGDASVTA ILVDGENVDT
LTEGQSGVIV LDTTPFYGES GGQAGDTGYI VFDGAKFEVQ DCQKSGANHL HVGQLLAGAV
KVGDKAQPVV DSAVRQATAL NHSATHLLHA ALRKVLGEHV TQKGSLVDSE RLRFDFSHFE
AVKPEELKQI ESMVNEQIRL NSPVETELCD MEAAQQKGAM ALFGEKYGDE VRVLSMGGAF
SVELCGGTHV SRTGDIGLIR ITSESGIASG VRRIEAVTGE KALSVIDASA DTLNAAAKLL
KASPENLLDK VEQLIAQNRQ LEKSLAAAKS KLASSSADEW LSEATDIAGV KVLAKAVEGV
DAKSLRDMMD KLKNKLGTSA VILASVNDDK ISLVAGVSQD ATSKIKAGDM VKHVAGLIGG
KGGGRPDMAQ GGGTDVEALP AAIGSVLDWA KGVIG
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