Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1299 |
Symbol | alaS |
ID | 3965320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1687182 |
End bp | 1689809 |
Gene Length | 2628 bp |
Protein Length | 875 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637920373 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_526773 |
Protein GI | 90020946 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.745017 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0109857 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGCG CAGAAATCCG CGAAGCTTTT TTACAATATT TCGAAAGTAA AGGGCATTCG CGTGTAGCAA GTAGCTCATT GGTACCTGGG AATGACCCCA CCTTGTTATT TACAAATGCT GGCATGGTGC AATTTAAAGA TGTGTTTCTA GGCCAAGACA ATCGCAGTTA TAGCCGCGCT ACAAGTTCGC AACGATGCGT TCGTGCCGGT GGTAAACACA ACGACCTAGA AAACGTAGGC TACACTGCGC GTCACCATAC ATTCTTTGAA ATGCTGGGGA ATTTTAGCTT TGGTGATTAC TTCAAAAAAG ACGCAATTAA TTACGCGTGG GAGTTTTTAA CGTCTAAAGA ATGGTTGGCG ATTCCAACAG AAAAACTATG TGTAACGGTG TATGCCGATG ATGATGAAGC ATACGGCATA TGGGCCAATG ATGTTGGTGT GCCCGAAGAT CGTATTATCC GTATAGGTGA TAACAAAGGC GGCCGCTACA ATTCAGATAA CTTTTGGGCA ATGGGAGATA CAGGCCCTTG TGGCCCATGT ACCGAAATTT TCTACGACCA TGGCGAACAT ATTTGGGGTG GACGCCCTGG TACACCAGAA GAAGATGGTG ACCGCTTTAT TGAGATTTGG AACGTCGTAT TCATGCAGTT TAACCGCAGT GTCGATGGTG AAATGGCGCC GTTACCTAAG CCCTCTGTGG ATACGGGCAT GGGCTTAGAG CGTATTGCGG CAGTTATGCA GCATGTTCAC AGCAATTATG AAATCGACTT GTTTCAAGCG TTATTAGAGG CTGCTGCGCA AGCAACGCAA GCCGAAGATA AGGATGCTAA ATCCCTGCGA GTAATTGCGG ATCATATTCG CTCCTGTGCG TTTCTTGTTA GCGATGGCGT GTTGCCCTCT AACGAAGGGC GAGGTTATGT GTTACGCCGC ATAATCCGCC GCGCTGTGCG TCACGGCAAT AAGCTCGGTC AAACTAAGCC GTTTTTCCAC ACATTGGTAG CCGCGTTAGT TGAACAAATG GGCGAGGCTT ACCCAGAGCT TGTGAGAGAT CAAGCCAGTA TTGAAAAGGT GCTGGCTGCA GAGGAAGATC AATTTGCTAA AACTCTCGAG AAAGGGATGG TGGTACTCGA GAGCGCCTTG TCAGAATTAA AAGGCACTAT AATTCCCGGC GAAGTTATTT TCACTTTGTA CGATACCTAC GGTTTCCCTG TAGATCTTAC CAACGACATT GCTCGCGAGC GAGAGCTAAC GCTAGATATG GACGGTTATG ACGCGCTTAT GGAGCAGCAG AAAAAGCGTG CGCGTGAATC AGGCAGTTTT AAAGTGGACT ACAGCGCGAC AGCCACTATT GAAGGCCATA CTAACTTTGT GGGTTACAGT GAGCTAACCG GCGACGCGAG CGTTACAGCA ATTTTGGTTG ATGGGGAAAA TGTAGACACC CTCACTGAAG GACAAAGCGG TGTAATTGTT TTAGATACCA CTCCATTTTA CGGCGAGTCT GGTGGTCAAG CTGGAGACAC CGGTTATATT GTTTTTGATG GCGCTAAATT TGAAGTGCAG GATTGCCAAA AGTCGGGCGC TAACCATTTA CATGTTGGGC AATTGCTAGC AGGCGCGGTG AAGGTGGGCG ATAAAGCTCA GCCTGTCGTA GATTCTGCTG TAAGGCAAGC CACGGCACTT AACCACTCTG CCACTCATCT ATTGCACGCT GCGCTTCGTA AAGTATTGGG CGAACATGTT ACGCAAAAAG GCTCGCTAGT GGATTCTGAG CGTTTGCGTT TCGATTTTTC TCATTTTGAG GCTGTAAAGC CTGAAGAGCT TAAGCAAATA GAAAGCATGG TCAACGAGCA AATTCGCTTG AATAGCCCTG TAGAAACTGA ATTGTGTGAT ATGGAAGCCG CTCAGCAAAA AGGCGCTATG GCGCTATTTG GTGAGAAGTA TGGCGATGAA GTGCGTGTAC TAAGCATGGG CGGAGCGTTC TCTGTCGAGC TGTGTGGTGG TACTCATGTA TCGCGCACAG GTGATATTGG GTTAATTCGA ATTACCTCTG AGTCTGGTAT TGCATCTGGT GTTCGCCGTA TAGAGGCGGT GACGGGTGAA AAAGCGTTAA GCGTTATCGA TGCTTCTGCA GACACTTTGA ATGCAGCGGC TAAACTGTTA AAAGCCTCGC CAGAAAACTT ACTAGATAAA GTTGAGCAGT TGATTGCGCA GAATCGTCAG TTGGAGAAAT CCTTGGCGGC GGCGAAGAGC AAGCTGGCAT CTTCCTCTGC GGATGAATGG CTAAGCGAAG CTACTGATAT AGCAGGTGTT AAAGTATTGG CTAAAGCGGT AGAGGGAGTT GATGCTAAGT CCTTACGAGA TATGATGGAT AAGCTCAAAA ACAAGCTAGG TACTTCTGCT GTTATCTTGG CTTCTGTCAA CGACGACAAA ATTAGTTTGG TTGCCGGAGT GTCTCAAGAT GCAACCTCAA AAATCAAAGC GGGCGATATG GTTAAGCATG TGGCTGGTTT AATTGGAGGC AAAGGGGGGG GGCGCCCAGA TATGGCTCAA GGTGGTGGCA CCGATGTGGA AGCCTTGCCT GCGGCTATTG GTTCGGTGTT AGATTGGGCT AAGGGCGTTA TTGGCTAA
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Protein sequence | MKSAEIREAF LQYFESKGHS RVASSSLVPG NDPTLLFTNA GMVQFKDVFL GQDNRSYSRA TSSQRCVRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKKDAINYAW EFLTSKEWLA IPTEKLCVTV YADDDEAYGI WANDVGVPED RIIRIGDNKG GRYNSDNFWA MGDTGPCGPC TEIFYDHGEH IWGGRPGTPE EDGDRFIEIW NVVFMQFNRS VDGEMAPLPK PSVDTGMGLE RIAAVMQHVH SNYEIDLFQA LLEAAAQATQ AEDKDAKSLR VIADHIRSCA FLVSDGVLPS NEGRGYVLRR IIRRAVRHGN KLGQTKPFFH TLVAALVEQM GEAYPELVRD QASIEKVLAA EEDQFAKTLE KGMVVLESAL SELKGTIIPG EVIFTLYDTY GFPVDLTNDI ARERELTLDM DGYDALMEQQ KKRARESGSF KVDYSATATI EGHTNFVGYS ELTGDASVTA ILVDGENVDT LTEGQSGVIV LDTTPFYGES GGQAGDTGYI VFDGAKFEVQ DCQKSGANHL HVGQLLAGAV KVGDKAQPVV DSAVRQATAL NHSATHLLHA ALRKVLGEHV TQKGSLVDSE RLRFDFSHFE AVKPEELKQI ESMVNEQIRL NSPVETELCD MEAAQQKGAM ALFGEKYGDE VRVLSMGGAF SVELCGGTHV SRTGDIGLIR ITSESGIASG VRRIEAVTGE KALSVIDASA DTLNAAAKLL KASPENLLDK VEQLIAQNRQ LEKSLAAAKS KLASSSADEW LSEATDIAGV KVLAKAVEGV DAKSLRDMMD KLKNKLGTSA VILASVNDDK ISLVAGVSQD ATSKIKAGDM VKHVAGLIGG KGGGRPDMAQ GGGTDVEALP AAIGSVLDWA KGVIG
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