Gene Sde_1293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1293 
Symbol 
ID3965314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1658124 
End bp1659416 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content46% 
IMG OID637920367 
ProductPoly(R)-hydroxyalkanoic acid synthase, class I 
Protein accessionYP_526767 
Protein GI90020940 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.987047 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAC GCAGTTTGAT TGTTGGACTG CTATGGCTTG GCTTGGTATC GGGGGATATC 
CAAGCGCTTA CACTAGAAGA AGCTGTGGCG TACACATTGG AGTCAAACCC AGAGGTTTTG
GCTGCATTGA ATGAATATAA GTCGCGTGAG CATGAAGTTA CTCAAGCGAA AGCGGGGTAT
TTACCCAGAG TTTCTGTGTC TGCCGCTGTG GGGCAAGAGC AACGCAAAGC GCCTGCTACT
GGTAATGAGA GTGTTGAGCT AGATAGAAAA GAACTAGCTA TTCAGGCTCG TCAAACAGTG
TTTGACGGTT TTGCAACCTC GGCAGAAGTT AAGCGTCAAC GGGCACGAGT TGAAGCAGCT
GAATTCGAAC TGCAAGCGGT ATCTGGTAAC ACTGCTTTGC GCGCTGCAGA AGTGTATTTG
AATGTGTTGC GTCATGCAGA ACTGTTGGAT TTGGCAAGAG ACTCCCTTTG GGAGCACCAA
AATATTTATG ACCAAATGAA GCTGCGCAGT GAGACAGGTG TTGGTAGTAA GGCGGATCTT
GATCAAATTG CTGCGCGGTT GGCGTTAGCT AATGCAAATA TGATAGTTGC TCAAAACAAT
TTTGCGGATG CGCAGAGTAA TTATCAGCGT GTTATAGGCT TGTTTCCAAA TTTGGAAAAC
ATGAGTAAGC CAGCTGCTAC TGAAGATTTG TTGCGCACGC GAGAAAAGGC TGTGCAGCAG
GCGCTTGAGA ATCATCCGAC GTTAAAAGCG GCGATTGCGG ATGTTACCGC TGCGCAGGCT
CAATATAAGG GGGCGAGTAG TGCACTGTGG CCGCGCCTAG AATTGGAAGC CGACAAGCGT
TGGGATGAAA ACGTAGGTGG TATAGAAGGC GAAGATGAGG ATTTTGTTGT ATCGCTTCGG
CTTAGTTACG ATTTATTTGC TGGCGGCGCT AATCGTGCCC GTAAAAAGCA AACTGCTGTT
TTGATTTCTG AAGCGAAAGA TATTCGCAAT AATTCAAGGC GACAGGTAAT CGAAAGTATG
GAGCTTTCGT GGAATGCGTA TGACGCGCTT AAAGCGCAGA AAGTGTTTTT AGAACAGCAC
GTAGAAGCTG CTAAAGCGAC AAAAACGGCC TATGCCAAGC AGTTTAATAT TGGCCGTCGC
ACATTATTAG ATTTACTCAA CACCGAGAAT GAAGTGGTCG ATTCGAAACG AGCACTTATT
AACGCCGACT ATGATCAGTT GCATGCGGTA TATCGTATTT ACAATGCATC TGGCTCTATG
TTGGCAGCTC TTGGTATAGC GTTAGACAGT TAA
 
Protein sequence
MNKRSLIVGL LWLGLVSGDI QALTLEEAVA YTLESNPEVL AALNEYKSRE HEVTQAKAGY 
LPRVSVSAAV GQEQRKAPAT GNESVELDRK ELAIQARQTV FDGFATSAEV KRQRARVEAA
EFELQAVSGN TALRAAEVYL NVLRHAELLD LARDSLWEHQ NIYDQMKLRS ETGVGSKADL
DQIAARLALA NANMIVAQNN FADAQSNYQR VIGLFPNLEN MSKPAATEDL LRTREKAVQQ
ALENHPTLKA AIADVTAAQA QYKGASSALW PRLELEADKR WDENVGGIEG EDEDFVVSLR
LSYDLFAGGA NRARKKQTAV LISEAKDIRN NSRRQVIESM ELSWNAYDAL KAQKVFLEQH
VEAAKATKTA YAKQFNIGRR TLLDLLNTEN EVVDSKRALI NADYDQLHAV YRIYNASGSM
LAALGIALDS