| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1292 |
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| Symbol | |
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| ID | 3965313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1656458 |
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| End bp | 1657843 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920366 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_526766 |
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| Protein GI | 90020939 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.969928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCAGCTA AAAAAAGACT TGGCTCAGTA TTTCAATCCA TTGCCGATAT GGCCGCCAAT
AGCGTGGACT CTCCTCTGCC GCCAGCCGAT TTAGATTACA TTACATCTGC TAGAGCTGCG
GTTTTAGAGC AGAGTCCAAA GGGCGGGCGT TACGTACTGT GGGCGGTGGT TGTGTTTTTT
GTTGTTACTG TGCTCTGGGC CAGTTGGGCG GAGCTAGATG AGTTTGCGCG CGGTGAAGGG
AAAGTTATTC CATCTCAGTA TGTTCAGGTT GTACAAAACT TGGAAGGCGG AATTCTTGCA
GAGCTTTATG TGCGTGAAGG GGAGCGGGTC GCGCGAGGTG AAAAATTATT GCGCATTGAC
GACACGCAGT TTGCTTCTAG CTTGCGTGAG GCGGGTGTAA CGCTGGCGCA ATGGGAGCTT
AAATCTATGC GCTTGCGGGC GGAATCTAAC GGTGAAGCAT TTAAACCCGA GATAAAAAAA
GGCTGGCCGC AATTTCTTGT GGATCAAGAG CTAGCGTATT ACCAATCGCG TCAACAAGAG
TTGGCAGGTA ATAAAGAAAT CTACGATCAG CAACTTACTC AGCGCAAACA GGAGTTAGCC
GAGCTAGAGG CAAGAAAAGA ACAGTTACAG CGCAGTTACA ATTTGCTGAA TCAAGAGTTG
CAAATGACTC GGCCGCTAGT TAGTCAAGGG GCTATTTCCG AAGTGGAATT ATTGCGATTA
GAGCGACAAG TGAACGATTT ACTTGGCGAG CTAGAGGCGG CACAGCTTGC TATTCCTAGG
GTTAAGTCAA GCCTAGATGA AGCGAAAGAA AAGCTGGCGA GTGTGGATAT TGTATTTAGA
CGAGAGGCCC AAGAGGAGCT TAATAAAGTC ACTCTCGAAT TGTCTCGCTT ACAAGAAACG
TCGGAAGCGT TAGTCGATAG GGTAAAGCGT ACAATGGTGA TATCGCCTGT AGCAGGTACG
GTCAAGCAAT TGCTTGTCAA AACGATAGGC GGAGTGATCC AGCCTGGCAT GGATATCGTA
GAAATTGTAC CCAGCGAAGA AATAATGTTG GTTGAGGCAA GGGTTCGACC AGCAGATATT
GGCTATTTGC ACCCAGGGCA AAAAGCCAAA GTGAAGTTTT CTGCTTATGA TTTTTCCGTA
ATGGGGGGGC TAGATGGAGA GGTTGTCCAT ATCAGCCCAG ACACCATTCA AGACGAAGAT
GGCGATAGTT TTTATCTCGT ACGTATCGAA ACCAGCAGAA CATTCATTGG CCCAGACGGT
AGAGAGCTAC CAATTATCCC TGGAATGACG GTAAGTGTTG ATATTTTGAC CGGTAAAAAG
ACAATTTTAG ATTACCTGTT AAAGCCCATC TTAAAAACTA AGCAGCTTGC AATGAGTGAA
CGATAG
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| Protein sequence | MSAKKRLGSV FQSIADMAAN SVDSPLPPAD LDYITSARAA VLEQSPKGGR YVLWAVVVFF
VVTVLWASWA ELDEFARGEG KVIPSQYVQV VQNLEGGILA ELYVREGERV ARGEKLLRID
DTQFASSLRE AGVTLAQWEL KSMRLRAESN GEAFKPEIKK GWPQFLVDQE LAYYQSRQQE
LAGNKEIYDQ QLTQRKQELA ELEARKEQLQ RSYNLLNQEL QMTRPLVSQG AISEVELLRL
ERQVNDLLGE LEAAQLAIPR VKSSLDEAKE KLASVDIVFR REAQEELNKV TLELSRLQET
SEALVDRVKR TMVISPVAGT VKQLLVKTIG GVIQPGMDIV EIVPSEEIML VEARVRPADI
GYLHPGQKAK VKFSAYDFSV MGGLDGEVVH ISPDTIQDED GDSFYLVRIE TSRTFIGPDG
RELPIIPGMT VSVDILTGKK TILDYLLKPI LKTKQLAMSE R
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