Gene Sde_1270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1270 
Symbol 
ID3965252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand+ 
Start bp1627630 
End bp1628337 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content46% 
IMG OID637920344 
ProductGntR family transcriptional regulator 
Protein accessionYP_526744 
Protein GI90020917 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.252683 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAATTGC AGGCGGTTAA AACGGATCGG TTATATATAA AGGTTGCAGA GCAGCTTTCT 
AAGTTAGTTA AGGATGGCGC TATTAAGCCT GGGGAGCGAT TCCCTGCCGA GCGAGACTTG 
GCGGAACGCT TGGGGGTTAG TAGGCCTACC ATTCGCGAGG CGATGATTGC ATTAGAGCTT 
TCTGGTGTAA TCGAAATTCG TACCGGTTCT GGTATCTATG TATCTAAAAA GAAAGCCAAA 
GTCGAAACCC AAATAGACAG TGGCGATAAG GGTGTTGGCC CTTTCGAGAT TCTGGAAATT 
CGTTATATTT TGGAAGCCGA AGCCTGTGCA CTGGCTGCAG CACGTATAAC AGACGAGCAG 
ATAGCGCAGT TAAAAGAAGC ACTTAAAGAG ATGGAAGAGG AAGAAAAGCA AGAGGATGCA 
TCGGAAAAAG CCGACTGGAA ATTCCACAGC ATTATTGCCG AGGCCTCGCA AAACAGCGCC 
ATTCATTCTA TTGTGAACTG GTTGTGGAAG CTGCGTAACC AATCTGAGCT AAGCACTGCA 
TTTTTAGAGC GTATTCGCAA AGAAGGTGTG CACCCCTCTA TTAACGACCA TGTGCGTATT 
ATCGAAGCTT TAGAAAAGCG CAACCCAGAA AAGGCGCGAA TGGCTATGAA AATGCACATC 
GAAAATGCAA CAGCGGCTGC TGCAGCGTAT TTTGGTAAAG AATCATAG
 
Protein sequence
MELQAVKTDR LYIKVAEQLS KLVKDGAIKP GERFPAERDL AERLGVSRPT IREAMIALEL 
SGVIEIRTGS GIYVSKKKAK VETQIDSGDK GVGPFEILEI RYILEAEACA LAAARITDEQ 
IAQLKEALKE MEEEEKQEDA SEKADWKFHS IIAEASQNSA IHSIVNWLWK LRNQSELSTA 
FLERIRKEGV HPSINDHVRI IEALEKRNPE KARMAMKMHI ENATAAAAAY FGKES