| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1269 |
|---|
| Symbol | |
|---|
| ID | 3965251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1626453 |
|---|
| End bp | 1627343 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920343 |
|---|
| Product | 2-keto-3-deoxygluconate kinase |
|---|
| Protein accession | YP_526743 |
|---|
| Protein GI | 90020916 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0299866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGAGC TTTCTCCCGC AAACCAAACG GATTACTCGC TAGGTTTTGG AGGAGATACG
TTAAACACCG CCATTTACTT CGCTAGATTA GGTGGCGAAG TTGATTTTGT AACCGCCCTA
GGTGACGACC ACCTAAGCGA AAACATGATT CGCGCGTGGG ATAAAGAAAA CGTAGGTACA
AGTCTCGTTA AACGCACGCC CGGCGCCTTA CCCGGCCTAT ACATGATTCA AACCGATGAC
GAAGGCGAGC GCAGCTTTCA CTATTGGCGA AAAAATGCCC CTGCCCGCAC ACTTATAGAG
GATTGGCCCG AAGTTTTAAC CAATCTGAAT GCGTTCCCAG CTATTTATTT AAGCGGCATT
ACCCTATCGC TATATTCACC ACAAAGCCGC ACAGCGCTAT TTAATTTTTT AGACGAATAC
AGAGCGCAAA ACGGCCAAGT TATATTCGAC ATTAACTATC GGCCTGCTAG CTGGCCAGAT
AAAACCGAAG CGCTAGCCAC CTTCGACGAA ATGCTTAAGC GCACAGACAC GGCCTTACCG
AGCTTTGACG ACGAAAAATT ATTGCACGGT GAACACTCTA AAACAGAATG CCTCGAGCGC
TACCTAACCG CAGGCGCTAA AGAAGTTGTT ATAAAAGATG GGGTAAACGG CTGCCTACTG
CACACAAACA ATCAAAGTGT ACTGCTACCT GTACCCGCTA AGGTGACACC TGTAGATACA
ACAGCCGCTG GAGACTCATT TAACGGCGCT TACCTCGCCG CGCGTTTAAA TGGCGCCAGC
GCCGAAAGAG CTGTGGCGCA AGGCCAAGCA TGCGCAGCAC TGGTTATTCA GCACCGCGGC
GCAATCGTGC CAATAAATGC CTTTAGAGCA TCTGATATTA AAAATAATTA A
|
|---|
| Protein sequence | MLELSPANQT DYSLGFGGDT LNTAIYFARL GGEVDFVTAL GDDHLSENMI RAWDKENVGT
SLVKRTPGAL PGLYMIQTDD EGERSFHYWR KNAPARTLIE DWPEVLTNLN AFPAIYLSGI
TLSLYSPQSR TALFNFLDEY RAQNGQVIFD INYRPASWPD KTEALATFDE MLKRTDTALP
SFDDEKLLHG EHSKTECLER YLTAGAKEVV IKDGVNGCLL HTNNQSVLLP VPAKVTPVDT
TAAGDSFNGA YLAARLNGAS AERAVAQGQA CAALVIQHRG AIVPINAFRA SDIKNN
|
|---|
| |