| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1266 |
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| Symbol | |
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| ID | 3965248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1623613 |
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| End bp | 1624911 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920340 |
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| Product | alanyl-tRNA synthetase class IIC |
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| Protein accession | YP_526740 |
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| Protein GI | 90020913 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00488824 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00240758 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGATATTA CAGCATTAAT TTTACTTTTT GTTTTTGGTG TTCTACTCGC CATAAACGTA
CCCATCGCCA TTGCTATTGC CATTTCTACG CTGGCTACAA TGTTAGTTAC GATTGATTCC
TTGCCCGCAG TTACAACGCT TGCACAGCGC ATGAGCGCAG GTATGGATAG CTTTGCCCTA
TTGGCCATTC CCTTTTTTAT ATTCTCTGGC TTTTTAATGG GGCAAGGCGG CATTGCACGT
AGGCTAATTG ATTTTGCCAA AGTGTTGGTT GGTCAATTAC CGGGCGGGTT AGCATTTGTA
AATGTTATAG CCTGTGCGTT ATTTGGTTCT ATTTCTGGGT CGGCAGTGGC TGCCACATCG
GCAATTGGCG GGTTTATGAT TCCAGCCATG AACAAAGAAG GTTACGACAA AAACTTTAAT
ACCGCGGTTA CGGTTACAGC CTCTACAACA GGTATGCTTA TTCCCCCCAG CAATATTCTC
ATTATTTATT CACTGGCGAG TGGTGGCGTT TCTATTGCTG CGTTATTTAT TGCAGGGTAC
CTACCCGGTA TTCTAGTTGC TATATCACTT ATGTGTGTGT GTGGTATTTA TGCAAAACGT
CGTGGCTACC CTGTTGGCCA GCGTGAATCA TTCGCCACAG CCATTAAGAA AACAGTGGGT
GCTATTCCTA GCTTGTTTTT AGTGGTGTTG GTAATAGGCG GTATTATTGG TGGTTACTTT
ACACCAACAG AGGCCGGTGC CATCGCAGTG GTGTATTCGC TTGTACTATC AATGGTGATT
TACAAAGAAA TCAAGCCCAA CCAAATACCA GCCATACTAA CCAAATCGGT TACCACTACG
GCTATTGTAA TGCTACTAAT CGGCGCTTCT GCCGCTATGT CTTGGTTGCT TTCTTACGAG
AATATCCCTC AAGAGATAAG TGCTGGCTTA TTAGGCATTA CAGAAAACAA AATTATCTTG
CTGCTACTTA TTAACGTGTT GTTACTGGTA GTGGGTACAT TTATGGATAT GACTCCTGCA
GTGCTTATTT TTACTCCAAT CTTTTTACCT ATTGTAGAAA CGCTGGGTAT ATCGCCACTG
CATTTTGGCA TTATTATGAT TCTCAACTTA TCTATCGGCT TGTGTACCCC CCCTGTTGGC
AGCGTATTGT TTGTAGGTTG TAGTGTGGGT AAAACTTCCA TTGCGCAGGT TATTAAGCCG
CTAATACCTC TATATATAGC CATGTTTATA GCCCTTGCTC TGGTAACCGC ATTTCCACAA
ATAAGCGAGT ATCTACCAAA AGCGTTTGGT TTATATTAG
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| Protein sequence | MDITALILLF VFGVLLAINV PIAIAIAIST LATMLVTIDS LPAVTTLAQR MSAGMDSFAL
LAIPFFIFSG FLMGQGGIAR RLIDFAKVLV GQLPGGLAFV NVIACALFGS ISGSAVAATS
AIGGFMIPAM NKEGYDKNFN TAVTVTASTT GMLIPPSNIL IIYSLASGGV SIAALFIAGY
LPGILVAISL MCVCGIYAKR RGYPVGQRES FATAIKKTVG AIPSLFLVVL VIGGIIGGYF
TPTEAGAIAV VYSLVLSMVI YKEIKPNQIP AILTKSVTTT AIVMLLIGAS AAMSWLLSYE
NIPQEISAGL LGITENKIIL LLLINVLLLV VGTFMDMTPA VLIFTPIFLP IVETLGISPL
HFGIIMILNL SIGLCTPPVG SVLFVGCSVG KTSIAQVIKP LIPLYIAMFI ALALVTAFPQ
ISEYLPKAFG LY
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