| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1263 |
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| Symbol | |
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| ID | 3965245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1616296 |
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| End bp | 1619058 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920337 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526737 |
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| Protein GI | 90020910 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000516737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000262574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCGACCT TTCAAGATCG ATTTAAATTA AAAATTATTT CAGCCGCAAT TATTGCCGCG
TCCAGCTTTG GCGCACAAGC ACAAACAAAC ACGGGTTCAC TAGAAGAAGT CGTTGTAACC
GGTATTCGCG CCTCGCTAAC AGGTGCTATG GATGTTAAGC GCGAAGCTAG TGGCGTGGTG
GATGCAATTA GCGCAGAAGA CATAGGTAAG TTTCCCGATA CTAACTTGGC GGAATCGTTA
CAACGTATTA CCGGTGTTGC CATCGACCGC AGCAATAACG AAGGTAACCA AGTAACAGTG
CGCGGGTTTG GCCCCAGCTT TAACTTGGTT ACACTTAATG GTCGCCAAAT GCCAAACTCT
TCTGCATTGG CCTCTACCCC AATATCTCGC AGCTTTAACT TTCGAGAAAT TGCTGCAGAA
TCAGTATCTG CAGTAGAAGT ACATAAAACA GGTAAAGCAC ATATGTTTAC CGGCGGATTG
GGTGCAACCA TTAATTTAAA AACATCTAAA CCCTTTGAGC TAGATGAATT TACCGCCCAC
GCCAGCGTAA AAGGCGTATT TGAACCAAGC GTAGAAAACG GCGATAACAT TACGCCTGAA
CTTTCCGGCA TGATAAGCAA AACCTTCGCC GATAATAAAT TCGGCGTACT CGCGTCTTTT
TCTCACGCAG ATCGTAATTT TCATGTAGAT CGCATAGGCA CTCAAAACGG CTGGAGCCAA
GGCTACCCAG GGCAAGCCTC ACCGGATACC TCTGCCATTA ACACCGACAA AAACCCAACC
TTAGCCACAT GGCGCGTGCC AACGGTTGAC CTCGACAACG CCGATTACGA GCGCACACGT
CAAAATGGTC AGTTAGTGCT GCAGTTCGCC CCCAACGATG AGCTTACCGC CACGGTGGAT
TACACCATGT CGCGGTTAGA AGAGAACGGC GATTTAAACA GAATGAGTTT TTGGTTCGAT
AATGTAGAAA CTGGCAGAGC CGACGAGAAC GGCACTATCA TCAACCCTGC CCGCTCCAAC
GACGAACTCA ATTTTTGGGC TTGGGAATAC GGCTTTACAA CAGAGAACGA TTCGTTTGGC
CTAAATATAG ATTGGGCGGT AAACGACGAG CTAGTACTTA CTTTAGATAC ACACAGCTCC
ACTTCGCACT CTAACCCCGG CGGCCAACCT GCCGAACGTA TAGCCAACCT AAAAAACCCA
TTTGGCGATG CAGCCCCAGT GCATATTGCT GCTGACTTTT CTAACAAGTT GCCAACAGTT
TCTTACGACG ACTCCGCTCT GCCCGGCGGC GCTTACGCGC TAGACAATAT TGAAGGCGAC
CTATATCAAG AACGCGGCAA CGAAGTTAAA AACAATATTC AACAAACACA GCTTCACGGT
GTTTGGCAAA ACCAAGAGGA CGGCGCCTTA ACAGCCATCA ACTTTGGTTT GGCATGGACC
CAAAATAAAG TGGATGCCAT AAGCATTTAT AGCGCAAACT TTTCGCTAGG TAACGGCGCC
ATAGATTTAA CTGGCTTAGA CCTCTCATTC ACCCCTGGTG ACATAGGCTT TGAATATGCC
CCCGTATTTA GCGCAAACCA ATTTATAGAT TTAGTCGAAC AGCAGGATTT AAAAAACCCA
ACCGCGCTCG ACAAAAATGG GGTTAAAGAA GATGTAAATG CACTGTACGT TTCGTTAGAT
TTCGAAACAG AATTTAACAA CATGCCAATA AGAGCAAATG TGGGCTTACG CTACGAAGAT
ACAGAAGTAA GCTCATACAC CATTGGCAAC CCTGTAATTG GGTTTAATTG GGTTTCGCCG
TTAGAGCTTT CTAAAATTTA TGCTTCTGAG GAAGCCGCAG ATACGCTTAC CGGTGAATAC
AACCATCTAC TGCCTAACTT CGATTTTAGT GTAGATGTAA TTGAAGATCT TGTTGCGCGA
GTTTCCTACA GCAAAACAAT TGCGCGCAGC AATATAGATG CAATGTACCC AGGCACAGAT
ATGCACACCC ACTTATCGGG CGGCCCTTTT AAAGCCAACC AAGGTAACCC AGACTTACTG
CCGTTCGAAT CAGAAAATTT CGACTTTTCT GTAGAATGGT ACTACAGCGA AGGCAGTTAT
TTATCTGGCG GTTTCTTCCG CAAAAAAGTA GATAACTTTA TCGCTTTAGG TGAAACGCAG
CGCGCAATTA ACAGCCCTCA AGGCGTACTA ACCGACCCTA GCGCAAACCC TCGCGCAGGC
TGCCCAGCGG GGTCAGTTGC AGACCCGGTA CCGGCTTGTA CATCACAACC CAGCGACCCT
GCAATAACAT GGCAAATAGC TGAGCCGCAA AACCTTAACG ACTCTTTAGT AGACGGGTGG
GAATTTAATA TTCAACACAT GTTTGCAGAA ACAGGTTTTG GGGTAATTGC AAACTACACC
ATGGTAAACA GCGACGATCG CTACGATGTT TACAGTCTAG AAAACGATCT AGCGCTACAA
GGCCTTAGCG ATACCGCTAA CCTTATTGGC TTTTACGAAA ACGACGACTT TCAAATACGT
GTTACTTACA ACTGGCGCGA CAAATTTTTA CTTGCCTCAG GTGTAGAGCC AACATTCACC
GCGGCCTATT CGCAAGTAGA TTTGAATGCT AGCTACAACA TAAACGAAAG TGTATCGGTA
TTTGTAGAAG GTATTAACTT AACCGATGAG GCAACTCACC GCTACGGCCG CTGGGAAAAT
CAACTCGTGG ACTATCAACA ATTTGGCCAA CGTTACAACC TAGGTATACG CACCAAATTT
TAG
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| Protein sequence | MATFQDRFKL KIISAAIIAA SSFGAQAQTN TGSLEEVVVT GIRASLTGAM DVKREASGVV
DAISAEDIGK FPDTNLAESL QRITGVAIDR SNNEGNQVTV RGFGPSFNLV TLNGRQMPNS
SALASTPISR SFNFREIAAE SVSAVEVHKT GKAHMFTGGL GATINLKTSK PFELDEFTAH
ASVKGVFEPS VENGDNITPE LSGMISKTFA DNKFGVLASF SHADRNFHVD RIGTQNGWSQ
GYPGQASPDT SAINTDKNPT LATWRVPTVD LDNADYERTR QNGQLVLQFA PNDELTATVD
YTMSRLEENG DLNRMSFWFD NVETGRADEN GTIINPARSN DELNFWAWEY GFTTENDSFG
LNIDWAVNDE LVLTLDTHSS TSHSNPGGQP AERIANLKNP FGDAAPVHIA ADFSNKLPTV
SYDDSALPGG AYALDNIEGD LYQERGNEVK NNIQQTQLHG VWQNQEDGAL TAINFGLAWT
QNKVDAISIY SANFSLGNGA IDLTGLDLSF TPGDIGFEYA PVFSANQFID LVEQQDLKNP
TALDKNGVKE DVNALYVSLD FETEFNNMPI RANVGLRYED TEVSSYTIGN PVIGFNWVSP
LELSKIYASE EAADTLTGEY NHLLPNFDFS VDVIEDLVAR VSYSKTIARS NIDAMYPGTD
MHTHLSGGPF KANQGNPDLL PFESENFDFS VEWYYSEGSY LSGGFFRKKV DNFIALGETQ
RAINSPQGVL TDPSANPRAG CPAGSVADPV PACTSQPSDP AITWQIAEPQ NLNDSLVDGW
EFNIQHMFAE TGFGVIANYT MVNSDDRYDV YSLENDLALQ GLSDTANLIG FYENDDFQIR
VTYNWRDKFL LASGVEPTFT AAYSQVDLNA SYNINESVSV FVEGINLTDE ATHRYGRWEN
QLVDYQQFGQ RYNLGIRTKF
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