| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1252 |
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| Symbol | |
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| ID | 3965234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1602290 |
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| End bp | 1603072 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920326 |
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| Product | lipoprotein NlpD |
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| Protein accession | YP_526726 |
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| Protein GI | 90020899 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.18696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0631891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGAGCAGG TTAGATGGCT GATCAATATA TTGATCGCTC TGTTGCTTCT TCAAGGATGC
AGCAGTGCAC CTTATCGGGC ACCTGTCACC GACGTATCCC AGCCTCCTCC TCGTAAAATA
CACACTCATA TTGTTGCTCC GGGTGAAACT CTCTATTCCA TCGCATGGCG CTACGATTTA
GATTACAAAT CCTTGGCGGC CGCTAACGGC GTAGCTTCGG GCTATACTAT TTACCCCGGG
CAAATAATTA ATCTGAATAT ATCTAATACT ACACCTCCTC CTAAAGTACT AAAAAAGAAC
CCGCCTGCCG TAGTGAAAAA GAAGGTGCCG GCGGTTGTTT CCACTCCCCG CCGATCAGGA
AATACATCAT CGACAGTCAA AAAACCGCCA GAAGTAACTA CAACCAAGTG GAGTGGTAGT
TGGCAATGGC CCTGCAAATG CGACGTAATT GCATCTTTTC ACAGCAATGG CGGGCTGCAT
AAGGGTATTG ATCTAAAAGG TGATTTGGGG GACTCTGTAC TCGCAGCTGG AGCAGGGCAA
GTAGTCTACG CCGGCGATGG GCTGCGGGGT TACGGCAAGT TACTAATCGT AAAACACAGT
GACAAATACT TAAGTGCTTA TGCCCACAAC AGTCGATTAT TAGTGAAAGA AGGTGACGTT
GTGGCAGCAG GACAAAAGAT TGCCGAAATG GGTTCTACAG GAACAGACAG TGTCAAACTT
CATTTTGAAG TGCGCTATGA CGGTCAACCG GTTAATCCAT TGAATTATCT CCCCAAGAAG
TAA
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| Protein sequence | MEQVRWLINI LIALLLLQGC SSAPYRAPVT DVSQPPPRKI HTHIVAPGET LYSIAWRYDL
DYKSLAAANG VASGYTIYPG QIINLNISNT TPPPKVLKKN PPAVVKKKVP AVVSTPRRSG
NTSSTVKKPP EVTTTKWSGS WQWPCKCDVI ASFHSNGGLH KGIDLKGDLG DSVLAAGAGQ
VVYAGDGLRG YGKLLIVKHS DKYLSAYAHN SRLLVKEGDV VAAGQKIAEM GSTGTDSVKL
HFEVRYDGQP VNPLNYLPKK
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