| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1251 |
|---|
| Symbol | |
|---|
| ID | 3968212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1601154 |
|---|
| End bp | 1602098 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920325 |
|---|
| Product | membrane protein |
|---|
| Protein accession | YP_526725 |
|---|
| Protein GI | 90020898 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2035] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.119387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC AGCGCACAAA AAAGGATTAC GCCTTAATTG CCTTAAAAGG CATGGCTATG
GGGGCTGCAG ATGTGGTGCC GGGGGTGTCG GGTGGCACTA TTGCTTTTAT TACAGGGATA
TATGACGAGC TGTTAGGCTC TCTTAAAAAA ATCGGCCCAG AGGCCGTGGT AGTACTATTT
AAACAAGGTA TACCTGCTGC TTGGAAACAC GTTAACGGTA ATTTTTTAGC CGCATTGTTT
GTGGGTGTTT TACTTAGTAT TAAAACCTTT GCGGGTATTG TGGGTTACTG TTTAGAGCAT
TACCCGCTAT TAGTGTGGGG TTTCTTTTCT GGGTTAATTC TCGCGTCCGT TGTACAGCTG
TATAGGCACG AAACCCACTG GAAATGGCTG GATTTAGTGC CTTTTTTATG CGGTGTGGCC
TTTGTGGTGG CCATTGCAAT GGCAAAGCCT GCGCATTTGC CTGGGCACAA TTGGGTACTG
TTTCTCGGTG GTTTTGTGGC TATATGCGCA ATGATTTTGC CGGGTATCTC TGGCAGCTTT
ATTTTGTTGT TGGTTGGTCT TTACCCTGTG TTTCTTGCTG CGATTAACGA GTTCAATATT
GTCGCGCTTG GAGCGTTTGC TGCGGGCTGT GCCTGCGGTT TAATGGTTTT CTCGCGCATA
CTCTCTTGGC TGCTTGCACG CTTTCGGCGC ACAACGTTTG CTACATTGTT GGGCTTTTTG
GTTGGTTCGC TTTATGTAAC CTGGCCTTGG AAAGTTGTTA ATGAATTTGT TATTAATCGC
CATGGCGAAC AAATCGCCAT TTCATCAAGT AACGTGTTAC CTAATGTTTA TACTGCTTCC
ACAGGTAACA CTAGCCTTTG GGCGATGGTT GTATTTTGTG CCATAATTGG TTTGTTTTTA
GTACTTTTTA TTGAGCTTTT AGCTAAGAAA ATGAAGGCCT CCTAG
|
|---|
| Protein sequence | MSEQRTKKDY ALIALKGMAM GAADVVPGVS GGTIAFITGI YDELLGSLKK IGPEAVVVLF
KQGIPAAWKH VNGNFLAALF VGVLLSIKTF AGIVGYCLEH YPLLVWGFFS GLILASVVQL
YRHETHWKWL DLVPFLCGVA FVVAIAMAKP AHLPGHNWVL FLGGFVAICA MILPGISGSF
ILLLVGLYPV FLAAINEFNI VALGAFAAGC ACGLMVFSRI LSWLLARFRR TTFATLLGFL
VGSLYVTWPW KVVNEFVINR HGEQIAISSS NVLPNVYTAS TGNTSLWAMV VFCAIIGLFL
VLFIELLAKK MKAS
|
|---|
| |