Gene Sde_1248 details

Gene Information

• Locus tag: Sde_1248
• Symbol: ispF
• ID: 3968209
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Saccharophagus degradans 2-40
• Kingdom: Bacteria
• Replicon accession: NC_007912
• Strand: +
• Start bp: 1598808
• End bp: 1599275
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637920322
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_526722
• Protein GI: 90020895
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.144429
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 0.753569
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCATAG GTCAGGGGGT TGACGTTCAC GCCTTTGGGG ATGGCGATAA AATAGTAATA 
GGTGGTGTAG TTATACCCTA CGAGCGCGGT TTAGTGGCGC ACTCCGATGG CGATGTATTG 
CTACACGCAC TTTGCGATGC TTTGCTTGGT GCAGCGGCCT TGGGGGATAT TGGCAAGCAC 
TTCCCCGATA CCGATAGCGC CTATAAAAAT GCATGCAGTC GCACTTTGCT GCGCATGGTT 
TATAGCAAAC TAAAAGCCAA AGGCTATAGT TTGGTAAATG CCGATATGAC CATTGTGGCA 
CAAGCGCCTA AAATGGCACC GCATATTAGT GATATGCGCG CAAAAATTGC AGAAGACTTA 
GATACCCACA TAGATAATAT TAACGTTAAA GCCACCACCA CAGAGCAACT CGGCTTTAAT 
GGACGTAAAG AAGGTATCAC CGCACTTGCA ACCGTACTAA TTAAATAG 

 

Protein sequence

MRIGQGVDVH AFGDGDKIVI GGVVIPYERG LVAHSDGDVL LHALCDALLG AAALGDIGKH 
FPDTDSAYKN ACSRTLLRMV YSKLKAKGYS LVNADMTIVA QAPKMAPHIS DMRAKIAEDL 
DTHIDNINVK ATTTEQLGFN GRKEGITALA TVLIK