| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1240 |
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| Symbol | |
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| ID | 3968201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1589672 |
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| End bp | 1592005 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920314 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_526714 |
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| Protein GI | 90020887 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAACC TTAGCTATAG ATTCAAATTG TTGTTATTTG TTGTCGGCAT CGTGGTGGTG
TTAGAAGCCG TTTCTTACAC CTCTGCACGA ACAGTCATTC GCGATGCTGT TACCGAGCAA
GCGCGGGAAG ACTTGCGCCG GGGCGGTGAT TTATTTAGTC AGTTAATGAA TAACCGCGCC
CGTCTACTCG CATTGGCTGT TGGCGTAATG GTTGAAGATT TTGGTTTGCG TGAGGCCGTT
GCAATTGGCC ACCCTGCAAC AATTGAATCT GCATTGCAAA ACCACATGGC ACGTATCCAC
GCGGACCTTG CCGTTGTGTT GGATGGCGAA GGAAAAGTCA TTGCCGGTAG TGCGTTAATT
CCAAATGCAG ACAGTGAATT ATTTTCTACG CTGATCGATA AAAATGGCTA TGCGCTCATT
TTAGTTGAAG GGCGGCTTTA CCAGTTTATG CTGGCGCCAA TTTTCGCTCC CGAATATGTG
GGTACCGCAG GGGTTGGTTT TGAAATTGAT CAGAGCTTAA GCGTATATTT AAAGCACTTA
ACTAATTTAG AAGTATCTTT TGTTCATGTA TTGCCGGAAT CACTTTTGTA TCTGAATGGT
ACTTTAAGTG AGCAAGAGCA GGTTAGTTTA TTGGCCAGTC GCGACATGGC TATTAACACG
GCGGGCACAA TTTGGCAGAC AGAACATATG TTGGGCAATA CTGTCCAGCT TAGCGCCGAA
CCACACAAGA TTGTTGCATC GTTACAAATT CCTATAAGTA GTGCCATGCA GCCATTTTCG
GTGCTCGATA CACAGCTGTT TGGGCTTACT ATCTCGTTTG TGTTTTTTGC TACGTTACTC
TCTTTGCTTG TTGCTAGAAG TGCAACCAAA CCTATTCAGG TTTTGGCAGA TGCCGCGCGC
GATATGGCTG ATGGGTTATA TGGACGCAGA GTTGTTGTTC ATTCTAATGA CGAATTTGGC
GAATTGGCAG ACGCCTTCAA TACAATGCAG CACGCTATCG CCGAGCGCGA GAAAAAAATT
GTGTATCAAT TGCAGCACGA TAGCTTAACG GGGTTGGAGA ACCGCTCTCA GGTTTTGCCG
CAGTTGTCGC GTTTACTTTC GGTTGCCCAG GCTAGTAATG CATCGCTGGC CGTGCTGGCG
GTAGATGTTA ATAAATTTAC CCAAATTAAC GATACGTTTA GCTCGGCAGC AGGGGATGAA
GTGTTGCGTC AGGTTGGTAC GCGCTTTCAG CAAATACTAC CAACGCAAAG CGTTGTTATT
CGCATGGGTA GTGACGAGTT TTTACTGTTA ATTTCACTTG GTGCCGAGAG TGAGATGCTG
AGTGTGCAAG AACAGTTGCA GCGCAATTTC GATGAGAGCT TTTTAATCGA AGGCGCACCC
ATGCGTATCG ATTTAAATAT TGGTTATTGT ATCTACCCTC AAGCAGGGGA TTCGCCCGAG
CTGTTATTAA GAAGAGCAAA CCTTGCGCTT AAGCATGCGC AGCAAACGGA TGTTTTTATT
GCCGAGTACC AGCAGGGCTG GGATGAAGCA CATTTGAAAA ACTTGCGCAT ACTTGGCGAG
TTTAATAGTG CGCTCGAAGC TGGGCAGTTG GCTGTTTACT ATCAACCTAA GGTGGGAGCA
AAAGATAAAG CAAAAGTGTG TGCAGAAGCG CTTATTCGCT GGATACATCC AGAGCTTGGC
TTTATTAACC CAGAAACCCT TATTCAACTT TTAGAAAATG CTGGCCAAGT TGGCGCATTA
ACGCGCTGGG TGTTGAGCCG AGCCTTAACC AATATGGTTG AGCTGCGCGA GCAGGGCATT
GATATTGAAG TGTCTGTAAA TTTATCTGCA TTGGATTTAT TAGAAGACGA ATTGCCAGAT
TATGTCGCAT CGCTTCTACA AGAACATAAT ATTGCTGCAG CTAAGCTGTG CTTAGAGGTT
ACCGAAAGCG CTCTAATGCG CGATGCAGAA CACAGCCTTG CAAATTTACA CCGCTTTAAT
CGTTTGGGGT GCGCTCTGTC GGTAGATGAT TATGGTACTG GTTATTCGTC TTTGTCTCAG
CTTAAGCAGC TGCCGGTGTC GGAATTAAAA ATAGATAAGT CGTTTGTATT GCAATTAGAT
CAAAACAAAG ACGACCAATT TATTGTGCAA TCTACAATTG AGTTGGGCCA CAGTTTGGGG
TTAAGCGTAA CTGCCGAGGG TGTGGAGAAC GAGGCTAGTG GTGCCATATT ACGGTCTTAC
GGGTGCGATA CTTTGCAGGG GTATTTTTAT AGTAAGCCCG CGCCATTACC TGAGTTTTCG
CTTTGGGTTA AAAATTATAT TGCGAATGTT CACTCATGGA GTGCGAATGA ATAA
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| Protein sequence | MLNLSYRFKL LLFVVGIVVV LEAVSYTSAR TVIRDAVTEQ AREDLRRGGD LFSQLMNNRA
RLLALAVGVM VEDFGLREAV AIGHPATIES ALQNHMARIH ADLAVVLDGE GKVIAGSALI
PNADSELFST LIDKNGYALI LVEGRLYQFM LAPIFAPEYV GTAGVGFEID QSLSVYLKHL
TNLEVSFVHV LPESLLYLNG TLSEQEQVSL LASRDMAINT AGTIWQTEHM LGNTVQLSAE
PHKIVASLQI PISSAMQPFS VLDTQLFGLT ISFVFFATLL SLLVARSATK PIQVLADAAR
DMADGLYGRR VVVHSNDEFG ELADAFNTMQ HAIAEREKKI VYQLQHDSLT GLENRSQVLP
QLSRLLSVAQ ASNASLAVLA VDVNKFTQIN DTFSSAAGDE VLRQVGTRFQ QILPTQSVVI
RMGSDEFLLL ISLGAESEML SVQEQLQRNF DESFLIEGAP MRIDLNIGYC IYPQAGDSPE
LLLRRANLAL KHAQQTDVFI AEYQQGWDEA HLKNLRILGE FNSALEAGQL AVYYQPKVGA
KDKAKVCAEA LIRWIHPELG FINPETLIQL LENAGQVGAL TRWVLSRALT NMVELREQGI
DIEVSVNLSA LDLLEDELPD YVASLLQEHN IAAAKLCLEV TESALMRDAE HSLANLHRFN
RLGCALSVDD YGTGYSSLSQ LKQLPVSELK IDKSFVLQLD QNKDDQFIVQ STIELGHSLG
LSVTAEGVEN EASGAILRSY GCDTLQGYFY SKPAPLPEFS LWVKNYIANV HSWSANE
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