| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1238 |
|---|
| Symbol | |
|---|
| ID | 3968199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1588348 |
|---|
| End bp | 1588917 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637920312 |
|---|
| Product | 4-methyl-5(beta-hydroxyethyl)-thiazol monophosphate biosynthesis protein-like |
|---|
| Protein accession | YP_526712 |
|---|
| Protein GI | 90020885 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | [TIGR01383] DJ-1 family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG TTCTTGTTCT AGTAGCTGAT GGTACAGAAG AAATAGAAGC CGTAACGGTG
GTGGATGTAT TGCGCCGTGT AGGGGCGAAA GTAACTGTTG CGTCGGTAAT GCCGCAAATG
GCGACTATTG CAGCCTCCCG TGGGGTGAAA ATAGTGGCCG ATACAATTCT AAGGCCGCAT
CTATTTGATA CCCAATGGGA TGCCCTTGTG TTGCCCGGTG GTATGCCTGG GGCGGAATAC
CTTGGCTTAT CTGCAGAGGT AGTAACACTT ATAAAGAACA CAAAAGCGGC GGGAAATATT
ATTGCGGCTA TTTGTGCGGC TCCGGCAGTA GTGTTGGGTC GCAACGGTTT GTTAGAGGGG
GCCGAAGCAA CGTGTCACCC CAGCTTTCAG GCAGAATTGG CGCATCACAC CACGGTATCT
AGCGCGCGCG TGGTAGATGC AGGCTGGCTT ATTACGAGCC AAGGGCCCGG CACCGCAATT
GAGTTCGCCC TAAAGCTGGT AGCGAGGCTT TACTCGCCAA TCGAAGCTGC CGCGCTGGCA
GAGGCAATGG TTGTAGATAT TCCTATTTAG
|
|---|
| Protein sequence | MKQVLVLVAD GTEEIEAVTV VDVLRRVGAK VTVASVMPQM ATIAASRGVK IVADTILRPH
LFDTQWDALV LPGGMPGAEY LGLSAEVVTL IKNTKAAGNI IAAICAAPAV VLGRNGLLEG
AEATCHPSFQ AELAHHTTVS SARVVDAGWL ITSQGPGTAI EFALKLVARL YSPIEAAALA
EAMVVDIPI
|
|---|
| |