| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1236 |
|---|
| Symbol | |
|---|
| ID | 3968197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1584811 |
|---|
| End bp | 1586808 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637920310 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526710 |
|---|
| Protein GI | 90020883 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATA AAATAACCAA GCCGTTTGGC TGCTGGAACT CGCCTATTAG CGCAGAAATA
GTAGCGGGTA AAAACCCTAA AATATCCGAG CCGTCAATTC AGCGTGGCCC CACAGGGGAA
TACCATTATT TTTGGCTGCA ATCGTGCCCA GAAGAAAAGG GCCGCACCAC CATCATGATG
ATGCAGGGCG ACAGCCCAAT TAACCTGTTA CCACGGCCAT TAAGTGCTGC CAGCAAGGTA
CATGAATACG GTGGCGGCAG CTACTGTGTT GCGGGTAATA CGGTTTATTT TGTATTGGCG
GACGACCAAC GCATTTATTG CATTGACTGG ACTCAACCCA GCAGCGAACC TCACGCACTA
ACAGAGGCCA CCGATGCCAA TAAACGCTAC GCAGATTTAA CCTACTGCGA ACACAGCCAA
TTATTATTTG CCGTTTGCGA AGAGCATACC CCCACAAGCC CGCACGCCGA ACCACACAAT
TATTTGCTGG CAATTAACCC CGCCACCAAA ACAACACGCA TACTCCACCG AGGGGAAGAT
TTTTATAGCA ACCCCCGCCC GTCGCCCTGC GGCACAAAAC TGTGCTGGAT AAGCTGGAAC
CACTCAGCCA TGCCGTGGAA CAACACACAA CTTTGGTTAG CTGATATAGA AGATAACGGC
ACGCTTGCTA ACGCGCACAT TATTAAAGGC GCAAATAAAG ACCAAAGCTT ATTTCAGCCA
ATGTGGCACC CAACAGGCGA ACTCTTTTGC GTAAGCGACA AAAGCAATTG GTGGAACATA
TACCGCTGCC CTAGCAGCGC GCTTGGCCAA AACACAAGCG ATGACGACTG GCTTGCGGTC
ACCAACCTAG AAGCCGAGTT CGCCACCCCG CAGTGGGTAT TTGGTATGAA AACCTACGGC
TTATTAGACG ATAACACACT ATTTAGCTGC TACAGCGCTA ACGGCAAGTG GTACACCGCA
ACTGTTGAAA ACTGCTTAAG CTCATCCCCT AGTGTGCAGC CCGTAGACCC CATAAACGAA
CAACTTAGCG AATGTGAAGG CGTAGTATGC GCCGCAAATC AAGCGGTATT TATTGGCGCC
AATGCCGCCA GCTTACCCAG CATATACCGT TGGGATAATA CACAAACCAC CTTTACAACA
ATTCACGCAA ACGCATTACC CGTGCACAGC GAAAATATAT CGCACCCACA GCCCTTTAGT
TTTGCGGTGT CAAGCGAGAT GCAAACCTCA CAAATCGGCC ACGGCTTTTA CTATGCCCCA
ACTAACCAAA CCTATTGCGG CCCAACTGAC GCCACAAGCG ACGAGCGCCC GCCTGTAATA
GTGTTGTGCC ACGGCGGCCC TACCGGCGCC ACATCCACTA GCTTTAACCC TAAAATTCAA
TACTGGACAT CGCGCGGCTT TGCCGTAATG GATATAAATT ACCGCGGCAG CACTGGTTAC
GGCAGAGAAT ACCGCGAAAG CTTGCATAAA AATTGGGGGG TATACGATGT AGATGATATG
TGCGCAGCAA CCCAATACGC CATAGATAAA GGCTGGGCCG CCCCCAGCAA GGCAATAATA
AAAGGTAGCA GCGCAGGCGG CTACACGGTG CTAGCGGCGC TAACCTTTAA GAATATTTTT
AATGCGGGGG TTAGCTTATA CGGCATTGGC GACTTAGAAA CCCTTGCCTG CGACACTCAT
AAATTTGAAG CGCGCTACCT CGATACGTTA ATAGGCCCCT ACCCCGAACA AAAACAGCTT
TATATCGACC GCTCGCCCAT TCACTACGCA GAAAAAATCA CCTGCCCCGT TTTAGTCTTT
CAAGGCATGC AAGATAAAGT AGTGCCTCCC AACCAAGCGC AAAACATGGT AGAAAAAGTA
CGCGCCAACG GCGTAAAAGT CACCTATAAA ACCTTTGAAA ATGAGGGGCA TGGTTTTAGG
GATGGCAACA ACATTCGTAC AATGCTAGAA ACTGAGCTAG CTTTTTACCA AACCACTTTT
AACCTAAATG GCAATTAA
|
|---|
| Protein sequence | MANKITKPFG CWNSPISAEI VAGKNPKISE PSIQRGPTGE YHYFWLQSCP EEKGRTTIMM
MQGDSPINLL PRPLSAASKV HEYGGGSYCV AGNTVYFVLA DDQRIYCIDW TQPSSEPHAL
TEATDANKRY ADLTYCEHSQ LLFAVCEEHT PTSPHAEPHN YLLAINPATK TTRILHRGED
FYSNPRPSPC GTKLCWISWN HSAMPWNNTQ LWLADIEDNG TLANAHIIKG ANKDQSLFQP
MWHPTGELFC VSDKSNWWNI YRCPSSALGQ NTSDDDWLAV TNLEAEFATP QWVFGMKTYG
LLDDNTLFSC YSANGKWYTA TVENCLSSSP SVQPVDPINE QLSECEGVVC AANQAVFIGA
NAASLPSIYR WDNTQTTFTT IHANALPVHS ENISHPQPFS FAVSSEMQTS QIGHGFYYAP
TNQTYCGPTD ATSDERPPVI VLCHGGPTGA TSTSFNPKIQ YWTSRGFAVM DINYRGSTGY
GREYRESLHK NWGVYDVDDM CAATQYAIDK GWAAPSKAII KGSSAGGYTV LAALTFKNIF
NAGVSLYGIG DLETLACDTH KFEARYLDTL IGPYPEQKQL YIDRSPIHYA EKITCPVLVF
QGMQDKVVPP NQAQNMVEKV RANGVKVTYK TFENEGHGFR DGNNIRTMLE TELAFYQTTF
NLNGN
|
|---|
| |