| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1204 |
|---|
| Symbol | rimM |
|---|
| ID | 3967873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1549032 |
|---|
| End bp | 1549583 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920278 |
|---|
| Product | 16S rRNA-processing protein RimM |
|---|
| Protein accession | YP_526678 |
|---|
| Protein GI | 90020851 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00134678 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTTACAC CAGTGGAAGC CAAAAAATCT AACTTGATTA CTGTTGGTAG AATTACTGGT
GTATTTGGTA TTAAGGGGTG GGTAAAGCTT AAATCGTTTA CCGATCCGCA AGATAATGTA
CTTGAGTATT CGCCTTTGTT GTTAAAAACA AAGCACGGCG TGAAAGAGTG CGAAATTGCA
GAATACCAAT TTAGGCCGCA AGGCTTGGTT GTACGCCTTA AAGGCGTTGA CGACCGCAAT
GCTGCTGAAG CATTAGCTCC AGTTGATGTC GCTATAGATA AAAGCCTGTT GCCAGAACTC
GATGACGACG ACTTTTATTG GCACCAGCTA GAGGGGTTAC GTGTTGTAAC TATCTATGAA
GGGAATACTC AAGATTTGGG TGTTGTCTCC AAGGTAATGG CAACAGGGGC GAACGACGTG
CTCGAAGTTA AACCCGATGC TCAGAGTATT GATGACAGGG ATAGGCTAGT GCCTTATGTG
CTAGACCTGT ATGTCAAAAA GGTAGACCTT TCCGCCGAGT GTATTACGGT GGACTGGGAC
CCAGAATTTT AA
|
|---|
| Protein sequence | MFTPVEAKKS NLITVGRITG VFGIKGWVKL KSFTDPQDNV LEYSPLLLKT KHGVKECEIA
EYQFRPQGLV VRLKGVDDRN AAEALAPVDV AIDKSLLPEL DDDDFYWHQL EGLRVVTIYE
GNTQDLGVVS KVMATGANDV LEVKPDAQSI DDRDRLVPYV LDLYVKKVDL SAECITVDWD
PEF
|
|---|
| |