Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1177 |
Symbol | |
ID | 3968616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1516378 |
End bp | 1518957 |
Gene Length | 2580 bp |
Protein Length | 859 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920251 |
Product | threonine synthase |
Protein accession | YP_526651 |
Protein GI | 90020824 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0725955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000211988 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACTTAA GAATTACCTC ATATTTTTTA ATTTTAGCTC TATTTTCTAG TGTGGGCTTT GCTATGCCTG CTGATAAAAA CAGTGATGCT AGCTTGCAAA CTATCGCCCC CAGCCGTGAG TATAATTTTA ATTTCGGTTG GTTATTTAAG TTGGGAGACA ACCCCACATA CAGTGAAGCC ACTTATGACG ACAGCGGTTG GCGAAATTTG CGCTTGCCGC ACGACTGGAG TATTGAGCAT GATTTTGACC CAACGCTGGA TGGTGCAACA GCGTATTTAC CTGGGGGAAT TGGTTGGTAC CGAAAGTATT TTGTAACGCC GCAAAACAAA AGCTCTAAAC GTTTTTATAT ATTGTTTGAT GGTATCTACA ACCACTCTAC AGTTTGGTTA AACGGTAAAA AAATAGGAGG GCGCATCAAC GGTTATACGC CTTTTTATTT CGACATAACC GAGCAGCTTG CAACGGCGGG TAGCGAAAAT GTATTGGCTG TGCGAGTGGA CCGCAGTCGC TATATAGATA GCCGTTGGTA TCCCGGTGCG GGGATATACC GCAATGTAAC CATGGTTGCT GTCGATCCGT TACACATTCC TATTTGGGGC GTGTATGTGC AAACCCCCGT GGCAACTAAA GAGCGCGCCG AGGTGGCGTT GGCTATTGAG ATAAATAACA AAAGGGCAGC ACCGGCTGAG TTTGTTATAG AAACAAAAAT ATTAGATGCT AACGCGAAAG AGGTGGGGCG AGCGCAGTCA ACTGAGACGA TACCAGCGGG TGAAGCAGGT GTATTCCAAA AAAATATTGC GTTTAACTCA CCAAGATTGT GGAGCCCCGA ACAGCCAGCA CTCTACACCG CTAGAATCAC TATTCGGCAG GGTGAGCACA TAGTTGATAG GCTAGACACG CGATTTGGAG TGAGGGATAT TTATTTTGAC CCTAAAACGG GTTTTTATTT AAACGGTGTT AATACGGCAA TAAAAGGGGT GAACTTGCAC CATGATGCTG GCGCCGTTGG GGTTGCCGTA CCGAAAGATG TATGGCGTCG TCGTTTGGAG AGCCTAAAAC GTGCAGGTAC AAATGCAATT CGAACTGCAC ACAACCCTGC CTCTGAAGAG TTTTTAAACC TATGCGATGA AATGGGCTTT TTAGTGCAGG CCGAAATCTT TGACGAGTGG GACAACCCTA AAGATAAGCG CTTAAATCAA TGGGAGCGGC ACAGCGACAG AATTAGTCGG GGCTACGCCG ACTACTTTCA ACAAGAAGCC GAAGAAGACC TCAAATTAGC CGTAAAGCGC GATCGCAATC ACCCTTCCAT TTTTATGTGG AGCATCGGTA ACGAAATAGA GTGGACGTAC CCGCGCTATA AAGAGGCAAC CGGCTATTTT GATATGAACG CATCCGGTAA TTATTTTTAC AACCCACCTT TTATTAGCGA GCAAGAAATT AAAGGTCGAT TTCATAAAAG TGAGCCGGGG CAGTACGTAT TGGCGAAAAC GGCAGCTAAG TTAGCTAGCT GGGTAAAAGA ATTGGATACT ACTCGCCCGG TTACGGCTAA TTTAATTCTG CCGTCAGTAA GCCATATTTC TGGCTACACC AATGCGTTGG ATGTTGTTGG CTACAGTTAT AGACGAGTTA TTTATGACTA CGGCCACGAG CGATACCCAG ATAAGCCGAT AATGGGAACC GAAAACGTAG TGCAGTGGCA CGAGTGGAAG GCGGTGATAG AGCGAGAATT TATTTCTGGC ACTTTTTTAT GGACGGGTGT GGACTACCTT GGCGAGGCTC ATGGCGCTTG GCCAAGAAAG GCCGTGCGCA GTGGGATGCT AGATTTAGCC GGTTTTGAAA CCCCTGCTTA CAGCCTGTAC CGAACTTTGT GGAGTGACGA ACCATATATA GCTATAACAA CCCAAACTGA AGATAAATCG TTATATAAGC GTGACGGTAA ACAAAAGGTA GTCGAGAAAA CACCTGGCGA TTGGCAATAT CGTGTGTGGG GCTGGCAGGA TGTGAATCGC CATTGGAACT ACAACAAAAA TGAGTTAGTT ATCGTTGAGG TGCTTAGCAA TTGCCCCTCG GTTGAACTGT TTTTAGGCGG CCGTTCTCTG GGAGTGCAAT CGTTAGCAGA TAACCCAGAT AGAATTTTAA AGTGGGCTGT GCCTTTTTCT GCTGGTGCAT TAACTGCCAA GGGAGTAGGG GAGTGTTCTA TCTTGGCAAA AATAGAAACG GCAGGGAACC CTGTCGCTGT TTCGCATACC ATTGATCACA AAAAGCTACC GCTAGATGGC GAAAGCGTAG CGCACGTAGA AGTGCAATTG GTCGATAAAA AAGGCAGGCC AGTTAGCCAT CAAGATGTAG TTATCGAATT CGAGCTTGCA GATGAATTAG AGTTGCTTGG CACAGATAAC GGTCGTACAT CTAGAATGGA GCGCTATAAA AGCACAAGGC TGCGAACAAG TGAAGGTAAG GCATTACTTA TTGTGCGCGC TAAAGCCAGC GCGACTACAC CGCCACTAGG CGCTGCGGCA ATAAAGACTA TTGACCTTGA AAAAGCTGTA AGCACAAAAA TAATGGGATC TGTGCAGTAA
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Protein sequence | MDLRITSYFL ILALFSSVGF AMPADKNSDA SLQTIAPSRE YNFNFGWLFK LGDNPTYSEA TYDDSGWRNL RLPHDWSIEH DFDPTLDGAT AYLPGGIGWY RKYFVTPQNK SSKRFYILFD GIYNHSTVWL NGKKIGGRIN GYTPFYFDIT EQLATAGSEN VLAVRVDRSR YIDSRWYPGA GIYRNVTMVA VDPLHIPIWG VYVQTPVATK ERAEVALAIE INNKRAAPAE FVIETKILDA NAKEVGRAQS TETIPAGEAG VFQKNIAFNS PRLWSPEQPA LYTARITIRQ GEHIVDRLDT RFGVRDIYFD PKTGFYLNGV NTAIKGVNLH HDAGAVGVAV PKDVWRRRLE SLKRAGTNAI RTAHNPASEE FLNLCDEMGF LVQAEIFDEW DNPKDKRLNQ WERHSDRISR GYADYFQQEA EEDLKLAVKR DRNHPSIFMW SIGNEIEWTY PRYKEATGYF DMNASGNYFY NPPFISEQEI KGRFHKSEPG QYVLAKTAAK LASWVKELDT TRPVTANLIL PSVSHISGYT NALDVVGYSY RRVIYDYGHE RYPDKPIMGT ENVVQWHEWK AVIEREFISG TFLWTGVDYL GEAHGAWPRK AVRSGMLDLA GFETPAYSLY RTLWSDEPYI AITTQTEDKS LYKRDGKQKV VEKTPGDWQY RVWGWQDVNR HWNYNKNELV IVEVLSNCPS VELFLGGRSL GVQSLADNPD RILKWAVPFS AGALTAKGVG ECSILAKIET AGNPVAVSHT IDHKKLPLDG ESVAHVEVQL VDKKGRPVSH QDVVIEFELA DELELLGTDN GRTSRMERYK STRLRTSEGK ALLIVRAKAS ATTPPLGAAA IKTIDLEKAV STKIMGSVQ
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