| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1135 |
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| Symbol | |
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| ID | 3968322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1469959 |
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| End bp | 1471590 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920206 |
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| Product | MSHA biogenesis protein MshL |
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| Protein accession | YP_526609 |
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| Protein GI | 90020782 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00664047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA AGTGGATTCT ACTAAAAGGC TGCGTGTTAA TTGCGACAGC ACTATTAATT
AGCTGTTCGT CGGTGCCGCA AACAGAAACC CCTGCAGAGC AAGCGCTGGA AACCGCAAGT
GCAACTGGTA CAGAGCCCGC CAGCGCCATG CCCGATTCAG TTACTGCCGC CTTATTTAAA
GGAGCAAATA GTCGGCCTCA AATAGAAGAG GAAGAGCGGT TTGATATTTC TGTTAATCAA
GTGCCTGCAC GCGACTTCTT TATTGGCTTA GTGGCCGACT CTGGGGTGAA TGTTGTCACC
CACCCAGAAG TTAACGGCGT GATATCGCTC GATTTAAAAA ACGTAACGCT GCGCAATGTG
CTCGATGTTA CTCGCGATGT GTACGGTTAT GAATACAAAT ACAACGGCGG CATTTATAGC
ATTTACCCTA GTAAAATGCG CACAGAATTA TTTGAAATAA ATTATATAGA TGTACAAAGA
GAAGGCTCGA CAGATACTAG TGTGCTAATT GGTGAAATAA CGTCTAGCGG TGGCAATGGG
AGCAATCAGG GCGGTAACAG TAGCAATCAA TCACAGGGTA AGCAGAGTAA TCAAGATAGC
AGCTCAGGTT CTCGTGTATC GACAAAAAAC AAAACAGATT TTTGGCAAGA CTTGAAATTA
ACCTTATCGG CAATTGTGGG TGGCGAAGCC AATGGCCGCA ATGTGGTGGT TAATCCGCAA
GCCGGTTTGG TGGTGGTGCG AGCTTTGCCT AGCGAAATAA GTGCAGTACG AGAATTTCTA
GATCGATCTG AGCTTAGTGT TAGGCGCCAG GTTATTCTCG AAACAAAAAT AGTGGAAGTA
AAGCTAAACG ATGGCTTTCA GGCTGGTGTG AATTGGAATG AAATTCGCGG CCAAATGCTG
CTTACTAAAA ATGTAGAAAC CTTTGATGTA CCTGTAGATA TTGTTAGCGC CAGCGAAAAC
GTAGGGGAAA TATTCTCATC TATATTTCGC ATTGGCGATA TCTCACAGTT GCTATCTTTA
TTAGAAACAC AGGGCAACGT GCAGGTGTTA TCTAGCCCGC GCGTGTCGAC TGTAAACAAT
CAAAAGGCGG TAATTCGTGT AGGCTCTGAC GAGTTCTTTG TTACTGGTAT ATCTAGCCAA
ACTACTTCTA CTGCGGCCTC AACGACCAGC GCCCCCAATA TTGAACTTAC ATCCTTTTTT
AGCGGTATTT CCCTCGATGT TACTCCACAA ATTGCAGATA ACGGCGATGT GATTTTACAT
GTGCACCCAA TCGTGAGTGA GGTAACAGAC CAAAACAAAG ATATAACGCT TGGTAACGAG
AAGTTCTCTT TACCGTTGGC GCTGCGCGAA GTGCGTGAGT CCGACAGTAT TGTTCGCGCT
CAAAGCGGTC AAATTATTGT GCTTGGCGGG TTGATGAAAG AGAAACTTAA CGATGTATAC
AGCAAGCGCC CCGGCCTTGG GGATGTACCT GTACTAAACA CTCTGTTTAG AAAGCGCAGC
AAGGTTTCAG AAAAAACCGA ACTGGTTATT TTGCTGCGCC CAATTGTAGT AGAAGACAAC
ACTTTCGCAG ATGACATTAA TCAAAGTCGT CAGCGTGTTA ATTCCATGTC AGATGAATAC
AGAGGCCGCT AG
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| Protein sequence | MSNKWILLKG CVLIATALLI SCSSVPQTET PAEQALETAS ATGTEPASAM PDSVTAALFK
GANSRPQIEE EERFDISVNQ VPARDFFIGL VADSGVNVVT HPEVNGVISL DLKNVTLRNV
LDVTRDVYGY EYKYNGGIYS IYPSKMRTEL FEINYIDVQR EGSTDTSVLI GEITSSGGNG
SNQGGNSSNQ SQGKQSNQDS SSGSRVSTKN KTDFWQDLKL TLSAIVGGEA NGRNVVVNPQ
AGLVVVRALP SEISAVREFL DRSELSVRRQ VILETKIVEV KLNDGFQAGV NWNEIRGQML
LTKNVETFDV PVDIVSASEN VGEIFSSIFR IGDISQLLSL LETQGNVQVL SSPRVSTVNN
QKAVIRVGSD EFFVTGISSQ TTSTAASTTS APNIELTSFF SGISLDVTPQ IADNGDVILH
VHPIVSEVTD QNKDITLGNE KFSLPLALRE VRESDSIVRA QSGQIIVLGG LMKEKLNDVY
SKRPGLGDVP VLNTLFRKRS KVSEKTELVI LLRPIVVEDN TFADDINQSR QRVNSMSDEY
RGR
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