| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1127 |
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| Symbol | |
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| ID | 3968314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1459939 |
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| End bp | 1463568 |
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| Gene Length | 3630 bp |
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| Protein Length | 1209 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920198 |
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| Product | putative allophanate hydrolase |
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| Protein accession | YP_526601 |
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| Protein GI | 90020774 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGATA CGGTATTAAT TGCCAACCGA GGAGCAATCG CCACTCGAAT TATTCGCACC
CTAAAAAAAA TGGGTATTCG AAGCGTTGCC GTTTACAACG AAGCAGATTA TCAATCTTTA
CACGTACAGC AAGCCGATAC TGCCATTAGT TTAGGCGCCG GCAGTGCGGC GGACACTTAC
CTCAATATAG CCAAAATACT CGATGCTGCT AAGCAAACCG GTGCGCAGGC TGTGCACCCA
GGCTACGGCT TTCTTAGTGA AAATACAGAA TTTGTAGGCT TGTGCGAACA GGCAGGTTTA
ACCTTTATTG GCCCCACGAC CGAGCAAATG CGTCTATTTG GTTTGAAGCA TGTTGCCCGC
GAAGCCGCAG AGCAAGCCGA TGTGCCTTTG GTGCCCGGCT CGCCGCTGCT GAGTGAATTA
GCCGAAGCAT TGGTTTGGGC CAAGGAGGTG GGCTACCCCA TAATGCTAAA AAGTACCGCC
GGTGGTGGTG GCATTGGTAT GCAGGTGTGC CACAGCGAAT CGCAGTTGCA GCAAGCGTGG
GATTCGGTTA AACGCTTAAG CGCGAATTAC TTTTCGAACG ACGGTGTTTT TTTAGAAAAA
TACATCGCCG ATGCGCGCCA TATAGAAGTA CAAATTTTCG GTGATGGCGC CGGTACTGCC
GTGGCGTTTG GCGAGCGCGA TTGTTCTGCT CAACGTCGCA ACCAAAAAGT TATCGAAGAA
ACCCCAGCCC CTAAGTTAAG CGAAGCCGTG CGCGCAGATT TATGTGCAAC GGCACAGCGT
TTAATGGCGT CGGTCAATTA TCGCAATGCC GGTACTGTGG AATTTATTTT TGATGCCAAA
GAAAATAAGT TTTACTTTTT AGAGGTGAAT ACACGCCTGC AAGTAGAGCA CGGCGTTACC
GAACAAGTGT GGGGTGTAGA CCTTGTTGAG TGGATGATAA AACAAGCTGC AGGCGAGCTA
GGTGATATTC AAGCTTTGCA TAGGCAATGT AAACCTGCAG GTCACGCGAT TCAAGTGCGC
GTATACGCAG AAGATCCGCA ACAAGATTTT AGACCCAGCG CAGGGTTGTT GTCTGCAGTG
GCTTGGCCCA CTGAAGCAAT ATTTGCTGCG CCTAGCAAAA GTAAATTGCG GATTGATCAC
TGGATAGAAT CGGGCGTTGA AGTACCAGCT TTATTTGACC CTATGCTCGC TAAAGTTATC
GTACACAGCG AAAATCGTGA ACAGGCTCTA GCAGATTTAA ACGCGAGCTT AGCGAACAGT
GCAATTTATG GCATAGAAAC CAATATCGAT TATGTGCGGG AAATTCTCGC TACCAGCACA
TGTAAAAGCG GGCAGTTACT TACCCGCAGT TTGGCCGAAT TTACATTTAA CGCTCACACT
TTTACCGTGC TAAATGGTGG CACGCAAACC ACGGTACAGG ATTACCCTGG CCGCACTGGC
TTGTGGCACG TTGGGGTTCC GCCTTCTGGG CCAATGGATA ACCTTAACTT TAGGTTAGCT
AACCAACTTG TTGGCAACCA AGCCGAGGCT GCCGGTTTAG AAATTACCTT AAATGGCCCA
AGCTTACATT TTAATACTGC TGCGCATATT GCCGTAACCG GCGCCGAAGT GCCTGTACTA
GTAGATGGCG TTGCGGTTGA TATGTACCGG TCTATCGCTG TTTCTGCTGG GCAAACATTG
GAAATAGGCC AAGCCAAAGG CAACGGTGCG CGTGCGTATT TAGCTATTGC TGGCGGTATT
CAATGCCCTG AATATTTAGG CTCTAAATCC ACGTTTACGC TAGGCCAGTT TGGTGGTCAT
GTTGGCAGGG CGCTACGGCC CGGCGACGTG TTAAAATTAT TGCCTTTAAA TAGCGAACAA
AAAATTACTG CGCGACAAAT TGCACAAGCA GATCGCCCTG CAATTGGCGA TACTTGGACA
ATACATGTTA TATACGGCCC GCACGGCGCC CCCGACTTTT TTACCGACAA AGATATACAA
GCGTTTTTCG ATGCCGAGTG GGAAGTGCAC TACAACTCTA GTCGCACCGG CGTGCGTTTA
ATTGGGCCCA AACCCGAATG GGCGAGAGAG ACCGGCGGCG AAGCGGGTTT GCACCCATCC
AATATTCACG ATAACGCTTA CGCCTTTGGC ACAGTGGATT TTACTGGCGA TATGCCGGTT
ATATTGGGGC CAGATGGTCC ATCGTTAGGC GGTTTTGTTT GCCCAGCTAC AATTATTCAA
GCCGACTTAT GGAAGCTGGG CCAACTAAAA GCAGGTGCAA AAATTAAATT TGTTGCGGTA
ACCCACGAGC AAGCCGTGCA GTTAGAAGCC GCACAACATT GGCAAGTTTC CCAATTGACC
TTTCGTGAAA AGCCCATTAC TTCTGCGGGT TTGCCTTCAC CTATCTTAAA AAAATCGTCG
TTGCTGGGCG AAGATGTTGT TTATCGTTTA GCTGGCGATC ACTTTTTACT GGTAGAGCTT
GGTCCTCTCG AATTAGATAT TGCGCGTCGC TTTAAAGTGC ATGCGCTTAT GTTGTGGATG
CAAGATAACC CGTTTACCGG CATGCGCGAA CTTACGCCGG GTATTCGCTC GTTGCAGGTG
CATTACGATT CACAGCAGCA CGCCGTGGAA TGCGTGATAG AACATATTGA GCGTGGTATA
CAAACACTGT TGCAAGCCGA CGATTTAAAA GTGCCTGCAC GCATAGTGCA CCTACCGCTA
AGCTGGGATG ACGAAGCCTG CAAATTAGCA ATAGAAAAAT ACACCCAATC AGTACGCCCT
GGCGCCCCTT GGTGTCCCAG TAACTTAGAA TTTATTCGCC GTATAAATGG TTTAGATTCA
ATCGAGCAGG TAAAAGAAAT TGTTTTTAAT GCTGCGTATT TAGTTATGGG CTTGGGGGAT
GTGTACCTAG GGGCGCCGGT AGCAACCCCG CTAGACCCGC GCCATAGATT AGTAACCACG
AAATACAACC CCGCGCGCAC TTGGACAGCA GAAAACTCGG TGGGCATTGG CGGCGCGTAT
ATGTGTGTAT ACGGTATGGA AGGCCCTGGC GGCTACCAAT TTGTAGGGCG TACTTTGCAA
ATGTGGAACC GCTACCGTCA AACCAATGTT TTCGAAAACC CTTGGTTACT GCAGTTTTTT
GATCAAATTC GTTTCTATGA AGTAAGCAGC GAAGAGCTAC ACGTTATTCG GCGTGATTTC
CCCTTGGGCA AATACCCAAT AAAAATAGAA AACACCACAT TTAGCTTGGC CGATTATCAG
CAATACTTAA GCGATAACTC AGCCACTATT GAACGCTTTC AAGCTGCGCG CGAGCAAGCG
TTTGAACAAG AGCTAAACCA GTGGCGAGCA GATGGACAAC TTACCTTTGA ACAAGCGGAT
GCTGGGCCAG AAGACAATGA TGCTAGCACG CCACCCGAAG GTGCTGTGGG CGTTGATAGC
CCCGTAAGCG GCAGTGTTTG GCAAGTACTT AAAAACGAAG GCGATTATGT AGAAAAAGGT
GAGGTACTTA TGGTGCTGGA ATCCATGAAA ATGGAAATAG ATGTCCACGC AACGTGCGCT
GGTAAAGTGA TAAAAACTCA CAAACTACAG GGCCATGCTG TCACGGCGGG GCAAACATTA
TTTTGGATTG CAAAGCAAAG TGAGGCCTAG
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| Protein sequence | MFDTVLIANR GAIATRIIRT LKKMGIRSVA VYNEADYQSL HVQQADTAIS LGAGSAADTY
LNIAKILDAA KQTGAQAVHP GYGFLSENTE FVGLCEQAGL TFIGPTTEQM RLFGLKHVAR
EAAEQADVPL VPGSPLLSEL AEALVWAKEV GYPIMLKSTA GGGGIGMQVC HSESQLQQAW
DSVKRLSANY FSNDGVFLEK YIADARHIEV QIFGDGAGTA VAFGERDCSA QRRNQKVIEE
TPAPKLSEAV RADLCATAQR LMASVNYRNA GTVEFIFDAK ENKFYFLEVN TRLQVEHGVT
EQVWGVDLVE WMIKQAAGEL GDIQALHRQC KPAGHAIQVR VYAEDPQQDF RPSAGLLSAV
AWPTEAIFAA PSKSKLRIDH WIESGVEVPA LFDPMLAKVI VHSENREQAL ADLNASLANS
AIYGIETNID YVREILATST CKSGQLLTRS LAEFTFNAHT FTVLNGGTQT TVQDYPGRTG
LWHVGVPPSG PMDNLNFRLA NQLVGNQAEA AGLEITLNGP SLHFNTAAHI AVTGAEVPVL
VDGVAVDMYR SIAVSAGQTL EIGQAKGNGA RAYLAIAGGI QCPEYLGSKS TFTLGQFGGH
VGRALRPGDV LKLLPLNSEQ KITARQIAQA DRPAIGDTWT IHVIYGPHGA PDFFTDKDIQ
AFFDAEWEVH YNSSRTGVRL IGPKPEWARE TGGEAGLHPS NIHDNAYAFG TVDFTGDMPV
ILGPDGPSLG GFVCPATIIQ ADLWKLGQLK AGAKIKFVAV THEQAVQLEA AQHWQVSQLT
FREKPITSAG LPSPILKKSS LLGEDVVYRL AGDHFLLVEL GPLELDIARR FKVHALMLWM
QDNPFTGMRE LTPGIRSLQV HYDSQQHAVE CVIEHIERGI QTLLQADDLK VPARIVHLPL
SWDDEACKLA IEKYTQSVRP GAPWCPSNLE FIRRINGLDS IEQVKEIVFN AAYLVMGLGD
VYLGAPVATP LDPRHRLVTT KYNPARTWTA ENSVGIGGAY MCVYGMEGPG GYQFVGRTLQ
MWNRYRQTNV FENPWLLQFF DQIRFYEVSS EELHVIRRDF PLGKYPIKIE NTTFSLADYQ
QYLSDNSATI ERFQAAREQA FEQELNQWRA DGQLTFEQAD AGPEDNDAST PPEGAVGVDS
PVSGSVWQVL KNEGDYVEKG EVLMVLESMK MEIDVHATCA GKVIKTHKLQ GHAVTAGQTL
FWIAKQSEA
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