| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1118 |
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| Symbol | |
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| ID | 3968305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1446310 |
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| End bp | 1449441 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920189 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_526592 |
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| Protein GI | 90020765 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0778165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCTA TTACCGATAT TTTTGTACGC AAGCCGGTAC TCGCGATAGT GGTGAACATC
ATCATTATTA TCGCTGGGTT GCAGGCCGTA AGCTCGCTTA CCGTTCGCCA ATACCCGCGC
AACGATAACG CAGTTATTAC TATTAACACC GCCTACATAG GCGCAGATGC AGAGCTGGTG
CGCGGTTTTA TTACCTCGCC CATTGAGCGC GCAGTATCTG GCGCAGACGG CATTGATTAC
GTCTCGTCTT CAAGCAGTCA AGGCGTATCT AGCGTTAGCG TGCGCCTAGA GCTTAACTAC
GACCCCATTA AAGCGCTTGC CGAAATTACC TCTAAGGTAA ACCAAGTGCG CGGCGACCTG
CCCCCCGAGG CTGAAGTACC GGTTATTAAT GTGGAGTCTG CCGACAGCCA GTTTGCAGCG
GCCTACCTAA GCTTTAGCTC AGACATATTG GCCGATAACC AAATTACCGA TTACTTAGTA
AGGGTTGTGC AACCTCGTCT TTCCGCCCTA GAAGGTATTC AACGCGCGGA TGTACTGGGC
GCTCGCACCT TTGCCATGCG CATTTGGCTG CAGCCAGACA GAATGGCCGC GCACAACATT
AGCCCAACGC AAGTAAGACA AGCACTGCAA GCCAACAACT ACCTCGCGGC ACTGGGCAGC
ACCAAGGGTC AATACATTCA AGTAAACCTT TCGGCCAACA CCGATTTAAA TTCTGTCGAT
GAATTTAAAG AGTTGGTACT GCGCTCAGAA AACGGCGCCA TCATTCGCTT AAAAGATGTT
GCCGAAGTGG TGCTTGGCTC CGAATCCTAC GATATGGAAG TTCGTTATTC GGGCAAAACC
GCTACATTTA TGGGTATTTT CCCGCAACCT AACGCCAACT CCTTAGATGT AATGGCGCTA
GTGCGTGAAG AAATGAAAAA CATGCAGGCG GCGCTACCCA AAGGTTTGGA CGCCGTTATT
GCCTACGATG CCACCGCTTA TATCGAAAGC TCTATTAGCG AAGTAATAAG TACATTAATA
GAAACTCTGC TTATTGTTGT AGTGGTTATC TTCTTGTTTT TAGGCTCCAT TCGCTCGGTG
ATTATTCCCG TGGTGGCCAT ACCGCTATCG CTGATTGGCG CCGTGTTTGT GATGCAAATA
TTTGGCTTTA GCTTAAACCT GCTTACGCTA CTGGCTATTG TATTGTCTGT AGGTATCGTA
GTGGATGACG CCATCGTAAT GGTGGAAAAC GTTGAGAGGC ATATATCTGA GGGCCAAACA
CCGTTTAAAG CAGCCATATT AGGCGCACGC GAACTCGTAG GCCCAGTGAT AGCCATGACC
ACAACCTTGG TTGCGGTTTA CTTACCAATC GGCCTACAGG GCGGCTTAAC CGGCTCTTTG
TTTAAAGAGT TTGCCTTTAC GCTTGCTGGT GCAGTTACCA TTTCGGGCAT AGTTGCTATT
ACCCTCTCGC CCATGATGGC TTCTAAAATG CTGAAAGAAG GCATGGAAGA CGAAGGCTTT
GCCAGCACAG TGGCGCGCAT TTTTGATCGC GTTAAGAATC GCTACACCCG CATGCTAGAT
CACACTTTGG AGCATCGCTT TCCCGTGTAT ATGGTGTGGG TAGCCACTGC GATACTAGGT
GTAGTGTTCT ATATGCAGTC TCCCAAAGAG TTAGCACCCA CAGAAGACCA AGGTGTTATT
TTTGGGATTG TGGAAGGCTC TGCTAGCTCA ACAATGGATC AAGCATCCAT TTTTGCTGCT
GCCGCCAACG ACGCGTTCTC TAGTTTTGAA GAAACCGACT TCACCTTTCA GCTAACATTC
CCCAATTCAG GTTTTGGAGG CATGGTGCTT AAGCCTTGGG ACGAACGCGA GCGCACCGTG
TTTGACGTGC TACCAGAAGC CGGTGGAAAG CTTTCGCAAA TTCCTGGTAT CAATTTATTC
CCGATTACCC CTCCAGCACT GCCTGGCGGC GGTAATATGC CAGTGGAATT TGTAATTGCT
TCTACTGCAG AGCCAGAGCA AATATTAAAG TTTGCCCAAG AACTGCAACA AAAAGCCACA
ATGAGCGGCC AGTTTGCATT CCCGCCGATG ATAGATACCC AAATCGACTT ACCTAAAGCG
GAGCTTATAA TCGACCGCGA CAAGGTGGCT GATATGGGGT TGAACATGCA ACAAGTAGGG
GCCGATGTAG GCACTATGCT TGGCGGCGGC TATGTTAACC GCTTTAATAT TGCCGGTCGC
AGCTACCGTG TAATTCCTCA AGTTGAACGC ATAGAGCGCC TCAACCCAGA GCAACTGGGT
AACATTTACG TCACCGGGCC TGAGGGCAAA TTAGTGCCAC TTAGCACTCT CGCCCGCGTA
GAGCGTAAAA CCGTCGCCCG TTCGCTCAAT CGCTTCCAAC AATTAAATGC GGTAAAACTA
AGCGGTGTAG CTATTGGTCC GCTTGATAAC GCGTTAAAAG TATTGGAAGA AGAGGCTGCA
AAAATATTGC CACAAGGCTA TATGATTGAT TACACAGGCG AATCCCGCCA GTTGCGACGC
GAAGGCAATA AACTTTTGCC CGCAATGATG ATGGCTAGCC TGTTAATTTT CTTAGTACTT
GCCGCGCAAT TTAATAGCTT CCGCGACCCG CTAATTGTAT TGGGTGGCTC AGTGCCATTG
GCGTGGTTCG GCGCACTAAT ATTTACTTTC TTAAAAATGC CCAACCCCAA TATGCACTTT
TGGACAGACG GGTGGACCAC CACACTCAAT ATTTATTCGC AAATTGGCTT GGTTACCCTT
ATCGGGCTAG TTGCTAAGAA TGGTATTTTG GTGGTGGAGT TTGCCAACAA AATGCAGGAG
CAAGGCCTAA CAAAACTAGC AGCTATTAAA GAGTCTGCCG GCACCCGCTT GCGCCCAGTA
CTTATGACCA CCGTTGCAAC TGTTGCCGGT CACTTCCCGT TGGTATTGGT AACAGGCGCC
GGCGCCGAAG CGCGTAACTC TATTGGCTTG ATACTAGTAG GTGGCATGGC AATTGGTACT
TTCTTTACAC TATTTGTGAT TCCTTCAATA TATATGCTTA TAGCGAAAGA CCACCGTGGT
GAAAAATTTC ATGTATCCGA GTTTGAGCTG GAGGATGAGT TAATAGAGGA GGAAAGTAAA
ACAACTGCCT AA
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| Protein sequence | MKSITDIFVR KPVLAIVVNI IIIIAGLQAV SSLTVRQYPR NDNAVITINT AYIGADAELV
RGFITSPIER AVSGADGIDY VSSSSSQGVS SVSVRLELNY DPIKALAEIT SKVNQVRGDL
PPEAEVPVIN VESADSQFAA AYLSFSSDIL ADNQITDYLV RVVQPRLSAL EGIQRADVLG
ARTFAMRIWL QPDRMAAHNI SPTQVRQALQ ANNYLAALGS TKGQYIQVNL SANTDLNSVD
EFKELVLRSE NGAIIRLKDV AEVVLGSESY DMEVRYSGKT ATFMGIFPQP NANSLDVMAL
VREEMKNMQA ALPKGLDAVI AYDATAYIES SISEVISTLI ETLLIVVVVI FLFLGSIRSV
IIPVVAIPLS LIGAVFVMQI FGFSLNLLTL LAIVLSVGIV VDDAIVMVEN VERHISEGQT
PFKAAILGAR ELVGPVIAMT TTLVAVYLPI GLQGGLTGSL FKEFAFTLAG AVTISGIVAI
TLSPMMASKM LKEGMEDEGF ASTVARIFDR VKNRYTRMLD HTLEHRFPVY MVWVATAILG
VVFYMQSPKE LAPTEDQGVI FGIVEGSASS TMDQASIFAA AANDAFSSFE ETDFTFQLTF
PNSGFGGMVL KPWDERERTV FDVLPEAGGK LSQIPGINLF PITPPALPGG GNMPVEFVIA
STAEPEQILK FAQELQQKAT MSGQFAFPPM IDTQIDLPKA ELIIDRDKVA DMGLNMQQVG
ADVGTMLGGG YVNRFNIAGR SYRVIPQVER IERLNPEQLG NIYVTGPEGK LVPLSTLARV
ERKTVARSLN RFQQLNAVKL SGVAIGPLDN ALKVLEEEAA KILPQGYMID YTGESRQLRR
EGNKLLPAMM MASLLIFLVL AAQFNSFRDP LIVLGGSVPL AWFGALIFTF LKMPNPNMHF
WTDGWTTTLN IYSQIGLVTL IGLVAKNGIL VVEFANKMQE QGLTKLAAIK ESAGTRLRPV
LMTTVATVAG HFPLVLVTGA GAEARNSIGL ILVGGMAIGT FFTLFVIPSI YMLIAKDHRG
EKFHVSEFEL EDELIEEESK TTA
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