| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1101 |
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| Symbol | |
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| ID | 3968268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1419370 |
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| End bp | 1422405 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920172 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526575 |
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| Protein GI | 90020748 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000197247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGCTA ATTCCGGCTT GTTTAACAGA AAGACACTTG CAGCAGCGGT TTCGACTTGC
TTGCTTGCTA GTGTAGGCGC AGAAGTTGTT GCGCAAGAGC AGCAGATGGA AGAGGTTGTA
GTTACTGGTA TTAGAGCTAG TTTACAACGT TCTATGGATG TTAAGCGTGA TTCGTCTGGT
GTTGTTGATG TGATCACGGC AGAAGATATT GGTAAGTTCC CTGATACGAA CTTAGCTGAA
TCTATGCAGC GTATATCAGG TGTTTCTATT AGTCGAGAAG GCGGTGAAGG CTCTCGAGTT
ACCGTGCGTG GTTTAGGGGC AGAATATAAC CTGGTAACGC ATAACGGTCG AACAGTGGCG
CGCACAACCG GTGATCGGAG TTTTAACTTC GCTGAAATCG CGGCTGAGTT AATCGCAGGT
GTGGCTGTAT CGAAAACAGC TAGTGCTGAT ACGGACAGTG GTGGTATGGG TGCTACGATA
GATATGCGCA GCATTAGGCC GTTGGCTGTA GGCGAGCAAA AAGCCGTTGT TAGCGGAAAG
TACATAACTG ACAGTTCTTG GGCTGGTGGG AACACACCAG AAATATTCGC TTTATATTCA
AATACATTTG CAGATGACAC GATAGGTGTG TCTGTTGCGT TTGACTATCA GGAGCGTGAG
AGTTCGCTGG CAAGAGCTAT GCTAGATAAT GGGTGGAAGA CGTTTACTGA AAATAACGCT
CAAAATGATA CGCACCCTAA TGTAGGTATA TACAGCAAGC CACAAAGTGC TCGTTATAAA
TTTGAACAGG ATAAGCGCGA AAGGTTTAAT GGCCAATTAG TTGTGCAGTG GGCTCCAACA
GATTCGATTG AGGCGACATT GGATTACGAC ACTTATGAGC GCTCAATTTA TTCTGATCGC
AATGAGGTTT CCGCTTGGTT TACATACCCA GAAAATTCAG ATATTGCCAC TCCTATTCAA
GGGCTGTGGA CAGCATCTAA TGGTGTTGCT ACTCCACTTC TATACTCTGA GACTTATTAC
TCTCCTAATA TCGCTGACAA TCTCAACGGT AATCCTAATG ATCTTTCTAT GGCCGGAGGT
CACTACGCAC ATAAGTTCAC AGGTGATACT TTAGGGGTAA ATGTAAAGTG GGCGGTTAGC
GACGCGTTGA ATCTAGAGTT TGACTATGCG ACTTCAGAAG CTAGTGATAC TCCAGACCAT
GAGCTAGGCT CAGATGTGAA TTTATCTACT GCAGCATTTA CTCGCACGAG TACAACTATA
GATACCACAG GGGAAATCTT CAGTGTAATT AACGGTGGTG GTGATGCTAC TGCTAATCAA
ATGCGAGTGA CTGGTTCAGT TTTCCAAAAT AATGCAAATG ACTCAAATGT TGATCAGTTT
AAATTCAAAG GTAATTTTGA GTTAAACGAG GAAAGCACAA TTGATTTTGG TGTGCGATCT
ACAGAGGTAA CTAACCGGCG TCGAAGCGTA ACCGTACAGC AAAACGGATG GGGTGGCCTT
GGCGTAGCGG GTGAGATGAC GGCTGCATTT GAAGGCACTG ACGCTTACGT CCGCGATCGT
TTTGATGGGG CGTTTTCTAC GTTTGCTGAC GCGTCATTCC TGCCGGCCAA TGGAAGACTT
AAGGACGGAA CCGATTTAAC ATCCGCTACC CCAATGAATC ACTTTTTCGA TTGGGATTTG
GAGACTGTTC AGCAGCTAGC AAGAGAAAAC TATGACGTAA GTAACGAGAC AGTGGGGGAT
TGTCCAGATG GTACATCTTC AGTATTCTGC TCCACAAAGG ATTATAGTCT CGGTTCTGAC
AATCAAACAA CGGAGACTAC CAATGCTATA TATGTTCAGT ATACTTATCA GCTAGAAGAC
CTTGAGGCAC GAGTTGGAGT TCGCCATGAG GCAACGGATG TTGAGTCAAC TGGCTTAAAT
GTTCTTTACA CCGGAGCAAA CTGGGGGGCT GATACTGAAA TTTCTTTTAC TGGTCGCACT
CAGAGTTACG TGACATATAA AGCCGATTAT TCTAATACCT TACCTAATAT AGATATTAGC
TATAATGCAA CAGAGGATCT GGTTTTACGG TCTTCATGGA GCAAATCGAT AGCTCGTGCT
GCGTATGACG AGATAGGCGC GGATGTCTCT GTAGGTGGAA ACTTTGGACG TCAAGTTGGC
TATGCAACTG GCAGTCAAGG TAACCCAAGT TTGGTGCCTT ACGAATCCAA CAATTTGGAT
GTGTCTATCG AGTGGTATTA CAGTGATTCT AGTTACTTTG CAGCATCTGG TTTTAGTAAG
AAAATAAGTA ACTTTATAGC TGACGAAACT GTAATTTTGA ATGGCCGCTA CGCTGATGAG
ATGCCGGAAA TTCATGATCC ATTTGCCGGT ACTTATACTC AAGCAGCAGT TGCAGCGCTT
GGTAGTTCTG CTACGGGTCA AGAGCTTAGA ACCTACATTT TTGACAATTT CGACGGTGAG
CCTGGAGTAA CTCGAGATAC CTCTGCTGGG GCGTCAACTT TTGCGGGTGA TATTATTGGT
CAGCAAGCTG ATCCATTGGT TGAGTTTAGA ATGGATACAC CATCGAACTC TGGTGATGAT
AGGGAGCTTC AGGGCTTAGA GCTTGCTTTA CAGCATATGT TTGGTGAGAC CGGCTTCGGT
ATGCAGGCTA ACTATACGAT GGTTAACTCT GACCTAGATT ACGATACCTC TCGACCTAGT
ACTAATCAGC GTCCATTATT GGGTGTTAGT GATAGTGCTA ACTTGGTTGG CTTTTACGAC
TTGAACGGCT GGAATGTTCG TATGTCTTAT AACTGGAGAG ATCAGTACTT ATCAGCATAT
ACCGATAGTG GTAATCAGAG TCCAATTTTT GTGGATGCGT ATTTCCAGCT TGATTTAGGT
ATTAGCTACG AAGTGACTGA TAACTTGAAG GTATCATTAG ACGGCATTAA TATTACTGAA
AATGCAATTA CTTATTCTGC TCGTAATAGT GATCAGAAAT TCCAGCATGA CGAGTACGGC
GGTCGCTGGA TGCTAGGTGC TAGCTACTCT TTCTAA
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| Protein sequence | MGANSGLFNR KTLAAAVSTC LLASVGAEVV AQEQQMEEVV VTGIRASLQR SMDVKRDSSG
VVDVITAEDI GKFPDTNLAE SMQRISGVSI SREGGEGSRV TVRGLGAEYN LVTHNGRTVA
RTTGDRSFNF AEIAAELIAG VAVSKTASAD TDSGGMGATI DMRSIRPLAV GEQKAVVSGK
YITDSSWAGG NTPEIFALYS NTFADDTIGV SVAFDYQERE SSLARAMLDN GWKTFTENNA
QNDTHPNVGI YSKPQSARYK FEQDKRERFN GQLVVQWAPT DSIEATLDYD TYERSIYSDR
NEVSAWFTYP ENSDIATPIQ GLWTASNGVA TPLLYSETYY SPNIADNLNG NPNDLSMAGG
HYAHKFTGDT LGVNVKWAVS DALNLEFDYA TSEASDTPDH ELGSDVNLST AAFTRTSTTI
DTTGEIFSVI NGGGDATANQ MRVTGSVFQN NANDSNVDQF KFKGNFELNE ESTIDFGVRS
TEVTNRRRSV TVQQNGWGGL GVAGEMTAAF EGTDAYVRDR FDGAFSTFAD ASFLPANGRL
KDGTDLTSAT PMNHFFDWDL ETVQQLAREN YDVSNETVGD CPDGTSSVFC STKDYSLGSD
NQTTETTNAI YVQYTYQLED LEARVGVRHE ATDVESTGLN VLYTGANWGA DTEISFTGRT
QSYVTYKADY SNTLPNIDIS YNATEDLVLR SSWSKSIARA AYDEIGADVS VGGNFGRQVG
YATGSQGNPS LVPYESNNLD VSIEWYYSDS SYFAASGFSK KISNFIADET VILNGRYADE
MPEIHDPFAG TYTQAAVAAL GSSATGQELR TYIFDNFDGE PGVTRDTSAG ASTFAGDIIG
QQADPLVEFR MDTPSNSGDD RELQGLELAL QHMFGETGFG MQANYTMVNS DLDYDTSRPS
TNQRPLLGVS DSANLVGFYD LNGWNVRMSY NWRDQYLSAY TDSGNQSPIF VDAYFQLDLG
ISYEVTDNLK VSLDGINITE NAITYSARNS DQKFQHDEYG GRWMLGASYS F
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